Optimization

Name HamiltonianApplyPacked
Section Execution::Optimization
Type logical
Default yes

If set to yes (the default), Octopus will ‘pack’ the wave-functions when operating with them. This might involve some additional copying but makes operations more efficient. See also the related StatesPack variable.

Name MemoryLimit
Section Execution::Optimization
Type integer
Default -1

If positive, Octopus will stop if more memory than MemoryLimit is requested (in kb). Note that this variable only works when ProfilingMode = prof_memory(_full).

Name MeshBlockDirection
Section Execution::Optimization
Type integer

Determines the direction in which the dimensions are chosen to compute the blocked index for sorting the mesh points (see MeshBlockSize). The default is increase_with_dimensions, corresponding to xyz ordering in 3D.

Options:

• increase_with_dimension:
  The fastest changing index is in the first dimension, i.e., in 3D this corresponds to ordering in xyz directions.
  
• decrease_with_dimension:
  The fastest changing index is in the last dimension, i.e., in 3D this corresponds to ordering in zyx directions.
  

Name MeshBlockSize
Section Execution::Optimization
Type block

To improve memory-access locality when calculating derivatives, Octopus arranges mesh points in blocks. This variable controls the size of this blocks in the different directions. The default is selected according to the value of the StatesBlockSize variable. (This variable only affects the performance of Octopus and not the results.)

Name MeshLocalBlockDirection
Section Execution::Optimization
Type integer

Determines the direction in which the dimensions are chosen to compute the blocked index for sorting the mesh points (see MeshLocalBlockSize). The default is increase_with_dimensions, corresponding to xyz ordering in 3D.

Options:

• increase_with_dimension:
  The fastest changing index is in the first dimension, i.e., in 3D this corresponds to ordering in xyz directions.
  
• decrease_with_dimension:
  The fastest changing index is in the last dimension, i.e., in 3D this corresponds to ordering in zyx directions.
  

Name MeshLocalBlockSize
Section Execution::Optimization
Type block

To improve memory-access locality when calculating derivatives, Octopus arranges mesh points in blocks. This variable controls the size of this blocks in the different directions. The default is selected according to the value of the StatesBlockSize variable. (This variable only affects the performance of Octopus and not the results.)

Name MeshLocalOrder
Section Execution::Optimization
Type integer
Default blocks

This variable controls how the grid points are mapped to a linear array. This influences the performance of the code.

Options:

• order_blocks:
  The grid is mapped using small parallelepipedic grids. The size of the blocks is controlled by MeshBlockSize.
  
• order_cube:
  The grid is mapped using a full cube, i.e. without blocking.
  
• order_global:
  Use the ordering from the global mesh
  

Name MeshOrder
Section Execution::Optimization
Type integer

This variable controls how the grid points are mapped to a linear array for global arrays. For runs that are parallel in domains, the local mesh order may be different (see MeshLocalOrder). The default is blocks when serial in domains and cube when parallel in domains with the local mesh order set to blocks.

Options:

• order_blocks:
  The grid is mapped using small parallelepipedic grids. The size of the blocks is controlled by MeshBlockSize.
  
• order_original:
  The original order of the indices is used to map the grid.
  
• order_cube:
  The grid is mapped using a full cube, i.e. without blocking.
  

Name NLOperatorCompactBoundaries
Section Execution::Optimization
Type logical
Default no

(Experimental) When set to yes, for finite systems Octopus will map boundary points for finite-differences operators to a few memory locations. This increases performance, however it is experimental and has not been thoroughly tested.

Name OperateAccel
Section Execution::Optimization
Type integer
Default map

This variable selects the subroutine used to apply non-local operators over the grid when an accelerator device is used.

Options:

• invmap:
  The standard implementation ported to OpenCL.
  
• map:
  A different version, more suitable for GPUs.
  

Name OperateComplex
Section Execution::Optimization
Type integer
Default optimized

This variable selects the subroutine used to apply non-local operators over the grid for complex functions.

Options:

• fortran:
  The standard Fortran function.
  
• optimized:
  This version is optimized using vector primitives (if available).
  

Name OperateDouble
Section Execution::Optimization
Type integer
Default optimized

This variable selects the subroutine used to apply non-local operators over the grid for real functions.

Options:

• fortran:
  The standard Fortran function.
  
• optimized:
  This version is optimized using vector primitives (if available).
  

Name ProfilingAllNodes
Section Execution::Optimization
Type logical
Default no

This variable controls whether all nodes print the time profiling output. If set to no, the default, only the root node will write the profile. If set to yes, all nodes will print it.

Name ProfilingMode
Section Execution::Optimization
Type integer
Default no

Use this variable to run Octopus in profiling mode. In this mode Octopus records the time spent in certain areas of the code and the number of times this code is executed. These numbers are written in ./profiling.NNN/profiling.nnn with nnn being the node number (000 in serial) and NNN the number of processors. This is mainly for development purposes. Note, however, that Octopus should be compiled with –disable-debug to do proper profiling. Warning: you may encounter strange results with OpenMP.

Options:

• no:
  No profiling information is generated.
  
• prof_time:
  Profile the time spent in defined profiling regions.
  
• prof_memory:
  As well as the time, summary information on memory usage and the largest arrays are reported.
  
• prof_memory_full:
  As well as the time and summary memory information, a log is reported of every allocation and deallocation.
  
• likwid:
  Enable instrumentation using LIKWID.
  
• prof_io:
  Count the number of file open and close.
  

Name ProfilingOutputTree
Section Execution::Optimization
Type logical
Default yes

This variable controls whether the profiling output is additionally written as a tree.

Name ProfilingOutputYAML
Section Execution::Optimization
Type logical
Default no

This variable controls whether the profiling output is additionally written to a YAML file.

Name StatesBlockSize
Section Execution::Optimization
Type integer

Some routines work over blocks of eigenfunctions, which generally improves performance at the expense of increased memory consumption. This variable selects the size of the blocks to be used. If GPUs are used, the default is 32; otherwise it is 4.

Name StatesCLDeviceMemory
Section Execution::Optimization
Type float
Default -512

This variable selects the amount of OpenCL device memory that will be used by Octopus to store the states.

A positive number smaller than 1 indicates a fraction of the total device memory. A number larger than one indicates an absolute amount of memory in megabytes. A negative number indicates an amount of memory in megabytes that would be subtracted from the total device memory.

Name StatesPack
Section Execution::Optimization
Type logical

When set to yes, states are stored in packed mode, which improves performance considerably. Not all parts of the code will profit from this, but should nevertheless work regardless of how the states are stored.

If GPUs are used and this variable is set to yes, Octopus will store the wave-functions in device (GPU) memory. If there is not enough memory to store all the wave-functions, execution will stop with an error.

See also the related HamiltonianApplyPacked variable.

The default is yes.