59 integer,
parameter :: RESTART_N_DATA_TYPES = 15
61 integer,
parameter,
public :: &
62 RESTART_UNDEFINED = -1, &
82 character(len=20) :: tag
83 character(len=MAX_PATH_LEN) :: basedir
84 character(len=MAX_PATH_LEN) :: dir
89 integer,
parameter,
public :: &
90 RESTART_TYPE_DUMP = 1, &
94 integer,
parameter,
public :: &
95 RESTART_FLAG_STATES = 1, &
106 character(len=20) :: tag
107 character(len=MAX_PATH_LEN) :: dir
109 integer :: default_flags = 0
112 character(len=4),
parameter :: type_string(2) = (/
"DUMP",
"LOAD"/)
124 type(namespace_t),
pointer,
public :: namespace
125 integer :: data_type = restart_undefined
126 integer ::
type = restart_undefined
128 character(len=MAX_PATH_LEN) :: dir_
129 character(len=MAX_PATH_LEN) :: pwd
132 character(len=MAX_PATH_LEN),
public :: basedir
134 type(mpi_grp_t) ,
public :: mpi_grp
135 logical :: initialized = .false.
136 logical,
public :: grid_changed = .false.
140 procedure,
private :: restart_basic_init
141 generic :: init => restart_basic_init
164 integer(int64),
allocatable :: map(:)
166 integer,
public :: file_format_states
175 procedure,
private :: drestart_write_mesh_function, zrestart_write_mesh_function
176 generic :: write_mesh_function => drestart_write_mesh_function, zrestart_write_mesh_function
227 subroutine block_signals()
229 end subroutine block_signals
234 subroutine unblock_signals()
236 end subroutine unblock_signals
243 type(mpi_comm),
intent(in) :: comm
246 logical :: file_exists
253 inquire(file=
'stop', exist=file_exists)
254 if (file_exists)
then
262 call mpi_bcast(
clean_stop, 1, mpi_logical, 0, comm)
277 integer,
intent(in) :: data_type
278 integer,
intent(in) ::
type
280 integer,
intent(out) :: ierr
281 character(len=*),
optional,
intent(in) :: dir
284 character(len=MAX_PATH_LEN) :: basedir, dirname
285 integer :: iline, n_cols, idata_type, i
286 character(len=MAX_PATH_LEN) :: default_basedir
287 character(len=20) :: tag
289 logical :: restart_write, dir_exists
290 character(len=MAX_NAMESPACE_LEN) :: namespace_prefix
298 namespace_prefix = trim(namespace%get())
300 default_basedir = trim(
io_workdir())//
'/restart/'
301 restart%basedir = default_basedir
302 restart%skip_ = .false.
303 restart%data_type = data_type
304 if(data_type>0 .and. data_type<=restart_n_data_types)
then
305 restart%flags =
basic_info(data_type)%default_flags
310 if (data_type < restart_undefined .and. data_type > restart_n_data_types)
then
311 message(1) =
"Illegal data_type in restart_init"
314 restart%namespace => namespace
461 if (
parse_block(namespace,
'RestartOptions', blk) == 0)
then
468 if (idata_type < 0 .or. idata_type > restart_n_data_types)
then
469 call messages_input_error(namespace,
'RestartOptions',
"Invalid data type", row=iline-1, column=0)
471 if (data_type == 0)
then
475 if (idata_type == data_type .or. idata_type == 0)
then
480 namespace_prefix = namespace_prefix(1:len_trim(namespace_prefix)-len_trim(
'.RestartOptions'))
482 if (len_trim(namespace_prefix) == 0 .or. trim(namespace%get()) == trim(namespace_prefix))
then
483 namespace_prefix = trim(namespace%get())
490 namespace_prefix =
""
501 basedir = restart%basedir
504 do i=1, len(namespace_prefix)
505 if (namespace_prefix(i:i) ==
'.') namespace_prefix(i:i) =
'/'
509 basedir = trim(basedir)//trim(namespace_prefix)
511 dirname = trim(
basic_info(restart%data_type)%dir)
515 select case (restart%type)
516 case (restart_type_dump)
528 restart%skip_ = .not. restart_write
530 if (restart%skip_)
then
531 message(1) =
'Restart information will not be written.'
537 restart%skip_ = .false.
540 message(1) =
"Unknown restart type in restart_init"
546 if (restart%data_type == restart_undefined)
then
553 restart%dir_ = trim(basedir)//trim(dirname)
555 if (index(restart%dir_,
'/', .
true.) == len_trim(restart%dir_))
then
556 restart%dir_ = restart%dir_(1:len_trim(restart%dir_)-1)
560 restart%pwd = restart%dir_
563 if (restart%mpi_grp%is_root())
then
565 if (restart%type == restart_type_dump .and. .not. dir_exists)
then
573 if (restart%mpi_grp%size > 1)
then
574 call restart%mpi_grp%bcast(dir_exists, 1, mpi_logical, 0)
577 if (restart%data_type == restart_undefined)
then
583 select case (restart%type)
584 case (restart_type_dump)
585 if (.not. restart%skip_)
then
586 message(1) =
"Info: "//trim(tag)//
" restart information will be written to '"//trim(restart%pwd)//
"'."
591 if (.not. dir_exists)
then
593 restart%skip_ = .
true.
595 message(1) =
"Info: Could not find '"//trim(restart%pwd)//
"' directory for restart."
596 message(2) =
"Info: No restart information will be read."
599 message(1) =
"Info: "//trim(tag)//
" restart information will be read from '"//trim(restart%pwd)//
"'."
605 restart%initialized = .
true.
614 res = restart%mpi_grp%is_root()
624 subroutine restart_init(restart, namespace, data_type, type, mc, ierr, mesh, dir, exact)
627 integer,
intent(in) :: data_type
628 integer,
intent(in) ::
type
631 integer,
intent(out) :: ierr
632 class(
mesh_t),
optional,
intent(in) :: mesh
634 character(len=*),
optional,
intent(in) :: dir
636 logical,
optional,
intent(in) :: exact
639 logical :: grid_changed, grid_reordered, exact_, with_changed_grid
640 integer :: default_format
650 restart%has_mesh =
present(mesh)
655 if (
present(exact) .and. .not.
present(mesh))
then
656 message(1) =
"Error in restart_init: the 'exact' optional argument requires a mesh."
662 restart%has_mesh =
present(mesh)
665 if(
present(mesh))
then
686 default_format = option__restartfileformatstates__adios2
688 default_format = option__restartfileformatstates__obf
690 call parse_variable(namespace,
'RestartFileFormatStates', default_format, restart%file_format_states)
695 if (restart%file_format_states == option__restartfileformatstates__adios2)
then
699 message(1) =
"Error: adios2 restart file format requested, but not compiled against ADIOS2 library."
711 call parse_variable(namespace,
'RestartWithChangedGrid', .false., with_changed_grid)
713 select case (restart%type)
714 case (restart_type_dump)
715 if (.not. restart%skip_)
then
721 call index_dump(mesh%idx, mesh%np_part_global, restart%pwd, restart%mpi_grp, &
724 message(1) =
"Unable to write index map to '"//trim(restart%pwd)//
"'."
730 message(1) =
"Unable to write mesh fingerprint to '"//trim(restart%pwd)//
"/grid'."
736 if(.not. restart%skip_)
then
738 restart%mpi_grp, grid_changed, grid_reordered, restart%map, ierr)
743 message(1) =
"Unable to check mesh compatibility: unable to read mesh fingerprint"
744 message(2) =
"in '"//trim(restart%pwd)//
"'."
745 else if (ierr > 1)
then
746 message(1) =
"Mesh from current calculation is not compatible with mesh found in"
747 message(2) =
"'"//trim(restart%pwd)//
"'."
749 message(3) =
"No restart information will be read."
754 restart%grid_changed = grid_changed
757 if (grid_changed)
then
758 if (grid_reordered)
then
759 message(1) =
"Info: Octopus is attempting to restart from a mesh with a different order of points."
761 message(1) =
"Info: Octopus is attempting to restart from a different mesh."
763 if (with_changed_grid)
then
766 message(2) =
"This is disabled. To enable this, set RestartWithChangedGrid=True."
773 restart%skip_ = grid_changed .and. .not. grid_reordered
774 if (restart%skip_)
then
775 message(1) =
"This calculation requires the exact same mesh to restart."
776 message(2) =
"No restart information will be read from '"//trim(restart%pwd)//
"'."
781 restart%skip_ = .false.
789 if (restart%mpi_grp%size > 1)
then
790 call restart%mpi_grp%barrier()
805 restart%data_type = 0
806 restart%skip_ = .
true.
814 class(
restart_t),
intent(inout) :: restart
818 if (restart%mpi_grp%is_root() .and. .not. restart%skip_)
then
819 select case (restart%type)
821 message(1) =
"Info: Finished reading information "//trim(
basic_info(restart%type)%tag)//
" from '"//trim(restart%dir_)//
"'."
822 call io_rm(trim(restart%pwd)//
"/loading")
823 case (restart_type_dump)
824 call io_rm(trim(restart%pwd)//
"/dumping")
825 message(1) =
"Info: Finished writing information "//trim(
basic_info(restart%type)%tag)//
" to '"//trim(restart%dir_)//
"'."
830 safe_deallocate_a(restart%map)
831 restart%has_mesh = .false.
849 character(len=MAX_PATH_LEN) :: restart_basic_dir
851 push_sub(restart_basic_dir)
855 pop_sub(restart_basic_dir)
864 character(len=*),
intent(in) :: dirname
865 integer,
intent(out) :: ierr
869 assert(.not. restart%skip_)
873 select case (restart%type)
874 case (restart_type_dump)
877 if (.not.
loct_dir_exists(trim(restart%dir_)//
"/"//trim(dirname)))
then
883 if (index(dirname,
'/', .
true.) == len_trim(dirname))
then
884 restart%pwd = trim(restart%dir_)//
"/"//dirname(1:len_trim(dirname)-1)
886 restart%pwd = trim(restart%dir_)//
"/"//trim(dirname)
901 assert(.not. restart%skip_)
903 restart%pwd = restart%dir_
913 character(len=*),
intent(in) :: dirname
917 assert(.not. restart%skip_)
919 assert(restart%type == restart_type_dump)
921 call io_mkdir(trim(restart%pwd)//
"/"//trim(dirname), parents=.
true.)
931 character(len=*),
intent(in) :: name
933 assert(.not. restart%skip_)
934 assert(restart%type == restart_type_dump)
938 call io_rm(trim(restart%pwd)//
"/"//trim(name))
953 character(len=*),
intent(in) :: filename
954 character(len=*),
optional,
intent(in) :: status
955 character(len=*),
optional,
intent(in) :: position
956 logical,
optional,
intent(in) :: silent
957 integer :: restart_basic_open
960 character(len=20) :: action, status_
962 push_sub(restart_basic_open)
964 assert(restart%initialized)
965 assert(.not. restart%skip_)
967 select case (restart%type)
968 case (restart_type_dump)
979 message(1) =
"Error in restart_basic_open: illegal restart type"
983 if (
present(status)) status_ = status
985 restart_basic_open =
io_open(trim(restart%pwd)//
"/"//trim(filename), &
986 action=trim(action), status=trim(status_), &
987 die=die, position=position, form=
"formatted", grp=restart%mpi_grp)
989 if (restart_basic_open == -1 .and. .not.
optional_default(silent, .false.))
then
990 message(1) =
"Unable to open file '"//trim(restart%pwd)//
"/"//trim(filename)//
"'."
994 pop_sub(restart_basic_open)
1001 integer,
intent(in) :: iunit
1002 character(len=*),
intent(in) :: lines(:)
1003 integer,
intent(in) :: nlines
1004 integer,
intent(out) :: ierr
1010 if (iunit /= -1)
then
1012 if (restart%mpi_grp%is_root())
then
1013 do iline = 1, nlines
1014 write(iunit,
"(a)") trim(lines(iline))
1028 integer,
intent(in) :: iunit
1029 character(len=*),
intent(out) :: lines(:)
1030 integer,
intent(in) :: nlines
1031 integer,
intent(out) :: ierr
1035 call iopar_read(restart%mpi_grp, iunit, lines, nlines, ierr)
1045 integer,
intent(inout) :: iunit
1049 if (iunit /= -1)
call io_close(iunit, restart%mpi_grp)
1051 call restart%mpi_grp%barrier()
1074 integer,
intent(in) :: flag
1101 character(:),
allocatable :: info
1110 character(:),
allocatable :: info
1118#include "restart_inc.F90"
1121#include "complex.F90"
1122#include "restart_inc.F90"
block signals while writing the restart files
unblock signals when writing restart is finished
This module implements batches of mesh functions.
This module handles the calculation mode.
character(len= *), parameter, public em_resp_fd_dir
character(len= *), parameter, public gs_dir
character(len= *), parameter, public iteration_dir
character(len= *), parameter, public casida_dir
character(len= *), parameter, public vib_modes_dir
character(len= *), parameter, public partition_dir
character(len= *), parameter, public kdotp_dir
character(len= *), parameter, public dm_dir
character(len= *), parameter, public em_resp_dir
character(len= *), parameter, public td_dir
character(len= *), parameter, public vdw_dir
character(len= *), parameter, public oct_dir
This module implements the index, used for the mesh points.
subroutine, public index_dump(idx, np, dir, mpi_grp, namespace, ierr)
subroutine, public io_close(iunit, grp)
subroutine, public iopar_read(grp, iunit, lines, n_lines, ierr)
character(len=max_path_len) function, public io_workpath(path, namespace)
construct path name from given name and namespace
subroutine, public io_rm(fname, namespace)
character(len=max_path_len) function, public io_workdir()
construct working directory
subroutine, public io_mkdir(fname, namespace, parents)
logical function, public io_dir_exists(dir, namespace)
Returns true if a dir with name 'dir' exists.
integer function, public io_open(file, namespace, action, status, form, position, die, recl, grp)
System information (time, memory, sysname)
subroutine, public loct_rm(name)
logical function, public loct_dir_exists(dirname)
This module defines functions over batches of mesh functions.
This module defines the meshes, which are used in Octopus.
subroutine, public mesh_check_dump_compatibility(mesh, dir, filename, namespace, mpi_grp, grid_changed, grid_reordered, map, ierr)
subroutine, public mesh_write_fingerprint(mesh, dir, filename, mpi_grp, namespace, ierr)
subroutine, public messages_warning(no_lines, all_nodes, namespace)
subroutine, public messages_obsolete_variable(namespace, name, rep)
character(len=256), dimension(max_lines), public message
to be output by fatal, warning
subroutine, public messages_fatal(no_lines, only_root_writes, namespace)
subroutine, public messages_input_error(namespace, var, details, row, column)
subroutine, public messages_info(no_lines, iunit, debug_only, stress, all_nodes, namespace)
type(mpi_comm), parameter, public mpi_comm_undefined
used to indicate a communicator has not been initialized
type(mpi_grp_t), public mpi_world
subroutine mpi_grp_init(grp, comm)
Initialize MPI group instance.
This module handles the communicators for the various parallelization strategies.
type(namespace_t), public global_namespace
Some general things and nomenclature:
character(len=:) function, allocatable, public parse_get_full_name(namespace, varname)
Given a namespace and a variable name, this function will iterate over all namespace ancestors contai...
subroutine, public parse_block_string(blk, l, c, res, convert_to_c)
integer function, public parse_block(namespace, name, blk, check_varinfo_)
subroutine zrestart_write_binary3_int32(restart, filename, np, ff, ierr, root)
subroutine drestart_write_binary1_int32(restart, filename, np, ff, ierr, root)
subroutine drestart_read_binary3(restart, filename, np, ff, ierr)
logical pure function restart_has_map(restart)
Returns true if the restart was from a different order of mesh points.
integer, parameter, public restart_partition
integer, parameter, public restart_custom
subroutine drestart_write_binary5(restart, filename, np, ff, ierr, root)
subroutine restart_basic_end(restart)
subroutine restart_basic_open_dir(restart, dirname, ierr)
Change the restart directory to dirname, where "dirname" is a subdirectory of the base restart direct...
integer, parameter, public restart_dm
subroutine restart_basic_mkdir(restart, dirname)
Make directory "dirname" inside the current restart directory.
integer, parameter, public restart_all
subroutine restart_basic_close(restart, iunit)
Close a file previously opened with restart_basic_open.
subroutine drestart_read_binary1(restart, filename, np, ff, ierr)
subroutine restart_basic_close_dir(restart)
Change back to the base directory. To be called after restart_basic_open_dir.
subroutine zrestart_write_binary1(restart, filename, np, ff, ierr, root)
integer, parameter, public restart_casida
subroutine zrestart_write_binary5_int32(restart, filename, np, ff, ierr, root)
logical function, public clean_stop(comm)
returns true if a file named stop exists
subroutine zrestart_read_binary5_int32(restart, filename, np, ff, ierr)
integer, parameter, public restart_kdotp
subroutine zrestart_read_binary3(restart, filename, np, ff, ierr)
integer, parameter, public restart_oct
subroutine drestart_read_binary3_int32(restart, filename, np, ff, ierr)
type(restart_basic_data_t), dimension(restart_undefined:restart_n_data_types), parameter basic_info
Information about the components for a given system.
subroutine zrestart_read_binary3_int32(restart, filename, np, ff, ierr)
subroutine drestart_read_binary2(restart, filename, np, ff, ierr)
integer, parameter, public restart_gs
subroutine zrestart_read_binary1_int32(restart, filename, np, ff, ierr)
integer, parameter, public restart_iteration
subroutine drestart_write_binary3(restart, filename, np, ff, ierr, root)
integer, parameter, public restart_flag_mix
subroutine drestart_write_binary3_int32(restart, filename, np, ff, ierr, root)
subroutine zrestart_write_binary1_int32(restart, filename, np, ff, ierr, root)
subroutine restart_init(restart, namespace, data_type, type, mc, ierr, mesh, dir, exact)
Initializes a specific restart object.
integer function restart_basic_open(restart, filename, status, position, silent)
Open file "filename" found inside the current restart directory. Depending on the type of restart,...
integer, parameter, public restart_flag_skip
integer, parameter, public restart_em_resp_fd
subroutine drestart_read_binary2_int32(restart, filename, np, ff, ierr)
subroutine drestart_write_binary5_int32(restart, filename, np, ff, ierr, root)
subroutine restart_basic_rm(restart, name)
Remove directory or file "name" that is located inside the current restart directory.
subroutine restart_end(restart)
integer, parameter, public restart_proj
subroutine zrestart_read_binary1(restart, filename, np, ff, ierr)
integer, parameter, public restart_flag_rho
integer, parameter, public restart_em_resp
integer, parameter, public restart_vib_modes
subroutine drestart_write_binary1(restart, filename, np, ff, ierr, root)
subroutine drestart_read_binary1_int32(restart, filename, np, ff, ierr)
subroutine zrestart_write_binary5(restart, filename, np, ff, ierr, root)
subroutine zrestart_read_mesh_function(restart, filename, mesh, ff, ierr)
In domain parallel case each process reads a part of the file. At the end all the processes have the ...
integer, parameter, public restart_flag_vhxc
logical pure function restart_basic_has_flag(restart, flag)
Returns true if...
subroutine restart_basic_write(restart, iunit, lines, nlines, ierr)
integer, parameter, public restart_flag_literal
subroutine drestart_read_binary5_int32(restart, filename, np, ff, ierr)
subroutine drestart_write_binary2(restart, filename, np, ff, ierr, root)
subroutine drestart_read_binary5(restart, filename, np, ff, ierr)
character(len=max_path_len) function restart_basic_dir(restart)
Returns the name of the directory containing the restart information. The use of this function should...
subroutine zrestart_write_binary2_int32(restart, filename, np, ff, ierr, root)
character(len=4), dimension(2), parameter type_string
logical pure function restart_basic_skip(restart)
Returns true if the restart information should neither be read nor written. This might happen because...
integer, parameter, public restart_td
subroutine drestart_read_mesh_function(restart, filename, mesh, ff, ierr)
In domain parallel case each process reads a part of the file. At the end all the processes have the ...
integer, parameter, public restart_type_load
character(:) function, allocatable restart_basic_get_info(restart)
subroutine restart_basic_read(restart, iunit, lines, nlines, ierr)
subroutine zrestart_read_binary2(restart, filename, np, ff, ierr)
integer pure function restart_basic_get_data_type(restart)
Returns the data type of the restart.
integer, parameter, public restart_vdw
subroutine zrestart_read_binary5(restart, filename, np, ff, ierr)
subroutine zrestart_write_binary2(restart, filename, np, ff, ierr, root)
integer, parameter, public restart_unocc
subroutine zrestart_write_binary3(restart, filename, np, ff, ierr, root)
subroutine zrestart_read_binary2_int32(restart, filename, np, ff, ierr)
logical function restart_basic_do_i_write(restart)
character(:) function, allocatable restart_get_info(restart)
subroutine restart_basic_init(restart, namespace, data_type, type, ierr, dir)
subroutine drestart_write_binary2_int32(restart, filename, np, ff, ierr, root)
subroutine, public add_last_slash(str)
Adds a '/' in the end of the string, only if it missing. Useful for directories.
This module defines the unit system, used for input and output.
Describes mesh distribution to nodes.
Stores all communicators and groups.
restart_basic_data_t stores global information about a specific component we want to save....
restart_basic_t stores the basic information about a restart object.