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Classes | |
struct | __fsid_t |
struct | __mbstate_t |
struct | _G_fpos_t |
struct | _G_fpos64_t |
struct | _IO_FILE |
struct | ldiv_t |
struct | lldiv_t |
struct | __sigset_t |
struct | timeval |
struct | timespec |
struct | fd_set |
union | __atomic_wide_counter |
struct | __pthread_internal_list |
struct | __pthread_internal_slist |
struct | __pthread_mutex_s |
struct | __pthread_rwlock_arch_t |
struct | __pthread_cond_s |
struct | __once_flag |
union | pthread_mutexattr_t |
union | pthread_condattr_t |
union | pthread_attr_t |
union | pthread_mutex_t |
union | pthread_cond_t |
union | pthread_rwlock_t |
union | pthread_rwlockattr_t |
union | pthread_barrier_t |
union | pthread_barrierattr_t |
struct | _SYMMETRY_ELEMENT_ |
struct | POINT_GROUP |
Typedefs | |
typedef unsigned char | __u_char |
typedef unsigned short int | __u_short |
typedef unsigned int | __u_int |
typedef unsigned long int | __u_long |
typedef signed char | __int8_t |
typedef unsigned char | __uint8_t |
typedef signed short int | __int16_t |
typedef unsigned short int | __uint16_t |
typedef signed int | __int32_t |
typedef unsigned int | __uint32_t |
typedef signed long int | __int64_t |
typedef unsigned long int | __uint64_t |
typedef __int8_t | __int_least8_t |
typedef __uint8_t | __uint_least8_t |
typedef __int16_t | __int_least16_t |
typedef __uint16_t | __uint_least16_t |
typedef __int32_t | __int_least32_t |
typedef __uint32_t | __uint_least32_t |
typedef __int64_t | __int_least64_t |
typedef __uint64_t | __uint_least64_t |
typedef long int | __quad_t |
typedef unsigned long int | __u_quad_t |
typedef long int | __intmax_t |
typedef unsigned long int | __uintmax_t |
typedef unsigned long int | __dev_t |
typedef unsigned int | __uid_t |
typedef unsigned int | __gid_t |
typedef unsigned long int | __ino_t |
typedef unsigned long int | __ino64_t |
typedef unsigned int | __mode_t |
typedef unsigned long int | __nlink_t |
typedef long int | __off_t |
typedef long int | __off64_t |
typedef int | __pid_t |
typedef long int | __clock_t |
typedef unsigned long int | __rlim_t |
typedef unsigned long int | __rlim64_t |
typedef unsigned int | __id_t |
typedef long int | __time_t |
typedef unsigned int | __useconds_t |
typedef long int | __suseconds_t |
typedef long int | __suseconds64_t |
typedef int | __daddr_t |
typedef int | __key_t |
typedef int | __clockid_t |
typedef void * | __timer_t |
typedef long int | __blksize_t |
typedef long int | __blkcnt_t |
typedef long int | __blkcnt64_t |
typedef unsigned long int | __fsblkcnt_t |
typedef unsigned long int | __fsblkcnt64_t |
typedef unsigned long int | __fsfilcnt_t |
typedef unsigned long int | __fsfilcnt64_t |
typedef long int | __fsword_t |
typedef long int | __ssize_t |
typedef long int | __syscall_slong_t |
typedef unsigned long int | __syscall_ulong_t |
typedef __off64_t | __loff_t |
typedef char * | __caddr_t |
typedef long int | __intptr_t |
typedef unsigned int | __socklen_t |
typedef int | __sig_atomic_t |
typedef float | float_t |
typedef double | double_t |
typedef long unsigned int | size_t |
typedef __builtin_va_list | __gnuc_va_list |
typedef struct _G_fpos_t | __fpos_t |
typedef struct _G_fpos64_t | __fpos64_t |
typedef struct _IO_FILE | __FILE |
typedef struct _IO_FILE | FILE |
typedef void | _IO_lock_t |
typedef __gnuc_va_list | va_list |
typedef __off_t | off_t |
typedef __ssize_t | ssize_t |
typedef __fpos_t | fpos_t |
typedef __sigset_t | sigset_t |
typedef __suseconds_t | suseconds_t |
typedef long int | __fd_mask |
typedef __fd_mask | fd_mask |
typedef __blksize_t | blksize_t |
typedef __blkcnt_t | blkcnt_t |
typedef __fsblkcnt_t | fsblkcnt_t |
typedef __fsfilcnt_t | fsfilcnt_t |
typedef struct __pthread_internal_list | __pthread_list_t |
typedef struct __pthread_internal_slist | __pthread_slist_t |
typedef unsigned int | __tss_t |
typedef unsigned long int | __thrd_t |
typedef unsigned long int | pthread_t |
typedef unsigned int | pthread_key_t |
typedef int | pthread_once_t |
typedef union pthread_attr_t | pthread_attr_t |
typedef volatile int | pthread_spinlock_t |
typedef struct __locale_struct * | __locale_t |
typedef __locale_t | locale_t |
typedef struct _SYMMETRY_ELEMENT_ | SYMMETRY_ELEMENT |
Functions | |
int | __fpclassify (double __value) __attribute__((__nothrow__ |
int __leaf__ | __attribute__ ((__const__)) |
int | __signbit (double __value) __attribute__((__nothrow__ |
int | __isinf (double __value) __attribute__((__nothrow__ |
int | __finite (double __value) __attribute__((__nothrow__ |
int | __isnan (double __value) __attribute__((__nothrow__ |
int | __iseqsig (double __x, double __y) __attribute__((__nothrow__ |
int | __issignaling (double __value) __attribute__((__nothrow__ |
double | acos (double __x) __attribute__((__nothrow__ |
double | __acos (double __x) __attribute__((__nothrow__ |
double | asin (double __x) __attribute__((__nothrow__ |
double | __asin (double __x) __attribute__((__nothrow__ |
double | atan (double __x) __attribute__((__nothrow__ |
double | __atan (double __x) __attribute__((__nothrow__ |
double | atan2 (double __y, double __x) __attribute__((__nothrow__ |
double | __atan2 (double __y, double __x) __attribute__((__nothrow__ |
double | cos (double __x) __attribute__((__nothrow__ |
double | __cos (double __x) __attribute__((__nothrow__ |
double | sin (double __x) __attribute__((__nothrow__ |
double | __sin (double __x) __attribute__((__nothrow__ |
double | tan (double __x) __attribute__((__nothrow__ |
double | __tan (double __x) __attribute__((__nothrow__ |
double | cosh (double __x) __attribute__((__nothrow__ |
double | __cosh (double __x) __attribute__((__nothrow__ |
double | sinh (double __x) __attribute__((__nothrow__ |
double | __sinh (double __x) __attribute__((__nothrow__ |
double | tanh (double __x) __attribute__((__nothrow__ |
double | __tanh (double __x) __attribute__((__nothrow__ |
double | acosh (double __x) __attribute__((__nothrow__ |
double | __acosh (double __x) __attribute__((__nothrow__ |
double | asinh (double __x) __attribute__((__nothrow__ |
double | __asinh (double __x) __attribute__((__nothrow__ |
double | atanh (double __x) __attribute__((__nothrow__ |
double | __atanh (double __x) __attribute__((__nothrow__ |
double | exp (double __x) __attribute__((__nothrow__ |
double | __exp (double __x) __attribute__((__nothrow__ |
double | frexp (double __x, int *__exponent) __attribute__((__nothrow__ |
double | __frexp (double __x, int *__exponent) __attribute__((__nothrow__ |
double | ldexp (double __x, int __exponent) __attribute__((__nothrow__ |
double | __ldexp (double __x, int __exponent) __attribute__((__nothrow__ |
double | log (double __x) __attribute__((__nothrow__ |
double | __log (double __x) __attribute__((__nothrow__ |
double | log10 (double __x) __attribute__((__nothrow__ |
double | __log10 (double __x) __attribute__((__nothrow__ |
double | modf (double __x, double *__iptr) __attribute__((__nothrow__ |
double | __modf (double __x, double *__iptr) __attribute__((__nothrow__ |
double __leaf__ | __attribute__ ((__nonnull__(2))) |
double | expm1 (double __x) __attribute__((__nothrow__ |
double | __expm1 (double __x) __attribute__((__nothrow__ |
double | log1p (double __x) __attribute__((__nothrow__ |
double | __log1p (double __x) __attribute__((__nothrow__ |
double | logb (double __x) __attribute__((__nothrow__ |
double | __logb (double __x) __attribute__((__nothrow__ |
double | exp2 (double __x) __attribute__((__nothrow__ |
double | __exp2 (double __x) __attribute__((__nothrow__ |
double | log2 (double __x) __attribute__((__nothrow__ |
double | __log2 (double __x) __attribute__((__nothrow__ |
double | pow (double __x, double __y) __attribute__((__nothrow__ |
double | __pow (double __x, double __y) __attribute__((__nothrow__ |
double | sqrt (double __x) __attribute__((__nothrow__ |
double | __sqrt (double __x) __attribute__((__nothrow__ |
double | hypot (double __x, double __y) __attribute__((__nothrow__ |
double | __hypot (double __x, double __y) __attribute__((__nothrow__ |
double | cbrt (double __x) __attribute__((__nothrow__ |
double | __cbrt (double __x) __attribute__((__nothrow__ |
double | ceil (double __x) __attribute__((__nothrow__ |
double | __ceil (double __x) __attribute__((__nothrow__ |
double | fabs (double __x) __attribute__((__nothrow__ |
double | __fabs (double __x) __attribute__((__nothrow__ |
double | floor (double __x) __attribute__((__nothrow__ |
double | __floor (double __x) __attribute__((__nothrow__ |
double | fmod (double __x, double __y) __attribute__((__nothrow__ |
double | __fmod (double __x, double __y) __attribute__((__nothrow__ |
int | isinf (double __value) __attribute__((__nothrow__ |
int | finite (double __value) __attribute__((__nothrow__ |
double | drem (double __x, double __y) __attribute__((__nothrow__ |
double | __drem (double __x, double __y) __attribute__((__nothrow__ |
double | significand (double __x) __attribute__((__nothrow__ |
double | __significand (double __x) __attribute__((__nothrow__ |
double | copysign (double __x, double __y) __attribute__((__nothrow__ |
double | __copysign (double __x, double __y) __attribute__((__nothrow__ |
double | nan (const char *__tagb) __attribute__((__nothrow__ |
double | __nan (const char *__tagb) __attribute__((__nothrow__ |
int | isnan (double __value) __attribute__((__nothrow__ |
double | j0 (extern double lgamma_r(double) |
int | remove (const char *__filename) __attribute__((__nothrow__ |
int | rename (const char *__old, const char *__new) __attribute__((__nothrow__ |
int | renameat (int __oldfd, const char *__old, int __newfd, const char *__new) __attribute__((__nothrow__ |
int | fclose (FILE *__stream) |
FILE * | tmpfile (void) |
size_t | __ctype_get_mb_cur_max (void) |
static __inline __uint32_t | __bswap_32 (__uint32_t __bsx) |
static __extension__ __inline __uint64_t | __bswap_64 (__uint64_t __bsx) |
static __inline __uint16_t | __uint16_identity (__uint16_t __x) |
static __inline __uint32_t | __uint32_identity (__uint32_t __x) |
static __inline __uint64_t | __uint64_identity (__uint64_t __x) |
int | select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout) |
int | pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask) |
long int | random (void) |
int | random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__((__nothrow__ |
int __leaf__ | __attribute__ ((__nonnull__(1, 2))) |
int | srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__((__nothrow__ |
int | initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__((__nothrow__ |
int __leaf__ | __attribute__ ((__nonnull__(2, 4))) |
int | setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__((__nothrow__ |
int | rand (void) |
int | drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__((__nothrow__ |
int | erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__((__nothrow__ |
int | lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__((__nothrow__ |
int | nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__((__nothrow__ |
int | mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__((__nothrow__ |
int | jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__((__nothrow__ |
int | srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__((__nothrow__ |
int | seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__((__nothrow__ |
int | lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__((__nothrow__ |
__uint32_t | arc4random (void) |
int | strcoll_l (const char *__s1, const char *__s2, locale_t __l) __attribute__((__nothrow__ |
int __leaf__ | __attribute__ ((__pure__)) |
int | true (void) |
double | pow2 (double x) |
int | establish_pairs (SYMMETRY_ELEMENT *elem) |
int | check_transform_order (SYMMETRY_ELEMENT *elem) |
int | same_transform (SYMMETRY_ELEMENT *a, SYMMETRY_ELEMENT *b) |
SYMMETRY_ELEMENT * | alloc_symmetry_element (void) |
void | destroy_symmetry_element (SYMMETRY_ELEMENT *elem) |
int | check_transform_quality (SYMMETRY_ELEMENT *elem) |
double | eval_optimization_target_function (SYMMETRY_ELEMENT *elem, int *finish) |
void | get_params (SYMMETRY_ELEMENT *elem, double values[]) |
void | set_params (SYMMETRY_ELEMENT *elem, double values[]) |
void | optimize_transformation_params (SYMMETRY_ELEMENT *elem) |
int | refine_symmetry_element (SYMMETRY_ELEMENT *elem, int build_table) |
void | mirror_atom (SYMMETRY_ELEMENT *plane, ATOM *from, ATOM *to) |
SYMMETRY_ELEMENT * | init_mirror_plane (int i, int j) |
SYMMETRY_ELEMENT * | init_ultimate_plane (void) |
void | invert_atom (SYMMETRY_ELEMENT *center, ATOM *from, ATOM *to) |
SYMMETRY_ELEMENT * | init_inversion_center (void) |
void | rotate_atom (SYMMETRY_ELEMENT *axis, ATOM *from, ATOM *to) |
SYMMETRY_ELEMENT * | init_ultimate_axis (void) |
SYMMETRY_ELEMENT * | init_c2_axis (int i, int j, double support[3]) |
SYMMETRY_ELEMENT * | init_axis_parameters (double a[3], double b[3], double c[3]) |
SYMMETRY_ELEMENT * | init_higher_axis (int ia, int ib, int ic) |
void | rotate_reflect_atom (SYMMETRY_ELEMENT *axis, ATOM *from, ATOM *to) |
SYMMETRY_ELEMENT * | init_improper_axis (int ia, int ib, int ic) |
void | find_center_of_something (void) |
void | find_planes (void) |
void | destroy_planes (void) |
void | find_inversion_centers (void) |
void | destroy_inversion_centers (void) |
void | find_infinity_axis (void) |
void | find_c2_axes (void) |
void | destroy_normal_axes () |
void | destroy_improper_axes () |
void | find_higher_axes (void) |
void | find_improper_axes (void) |
void | report_planes (void) |
void | report_inversion_centers (void) |
void | report_axes (void) |
void | report_improper_axes (void) |
void | report_and_reset_counters (void) |
void | find_symmetry_elements (void) |
int | compare_axes (const void *a, const void *b) |
void | sort_symmetry_elements (void) |
void | report_symmetry_elements_verbose (void) |
void | summarize_symmetry_elements (void) |
void | report_symmetry_elements_brief () |
void | identify_point_group (int *point_group) |
void | symmetries_finite_init_ (const int *natoms, const int *types, const double *positions, const int *verbosity, int *point_group) |
void | symmetries_finite_get_group_name_ (const int *point_group, char *name, unsigned long l1) |
void | symmetries_finite_get_group_elements_ (const int *point_group, char *elements, unsigned long l1) |
void | symmetries_finite_end_ () |
Variables | |
int | __leaf__ |
FILE * | stdin |
FILE * | stdout |
FILE * | stderr |
div_t | |
ATOM | |
static double | ToleranceSame = 1e-3 |
static double | TolerancePrimary = 5e-2 |
static double | ToleranceFinal = 1e-4 |
static double | MaxOptStep = 5e-1 |
static double | MinOptStep = 1e-7 |
static double | GradientStep = 1e-7 |
static double | OptChangeThreshold = 1e-10 |
static double | CenterOfSomething [3] |
static double * | DistanceFromCenter |
static int | verbose = 0 |
static int | MaxOptCycles = 200 |
static int | OptChangeHits = 5 |
static int | MaxAxisOrder = 20 |
static int | AtomsCount = 0 |
static ATOM * | Atoms |
static int | PlanesCount = 0 |
static SYMMETRY_ELEMENT ** | Planes |
static SYMMETRY_ELEMENT * | MolecularPlane |
static int | InversionCentersCount = 0 |
static SYMMETRY_ELEMENT ** | InversionCenters |
static int | NormalAxesCount = 0 |
static SYMMETRY_ELEMENT ** | NormalAxes |
static int | ImproperAxesCount = 0 |
static SYMMETRY_ELEMENT ** | ImproperAxes |
static int * | NormalAxesCounts |
static int * | ImproperAxesCounts |
static int | BadOptimization = 0 |
static char * | SymmetryCode |
static long | StatTotal = 0 |
static long | StatEarly = 0 |
static long | StatPairs = 0 |
static long | StatDups = 0 |
static long | StatOrder = 0 |
static long | StatOpt = 0 |
static long | StatAccept = 0 |
POINT_GROUP | PointGroups [] |
char * | PointGroupRejectionReason |
typedef unsigned char __u_char |
Definition at line 65 of file symmetries_finite.c.
typedef unsigned short int __u_short |
Definition at line 66 of file symmetries_finite.c.
typedef unsigned int __u_int |
Definition at line 67 of file symmetries_finite.c.
typedef unsigned long int __u_long |
Definition at line 68 of file symmetries_finite.c.
typedef signed char __int8_t |
Definition at line 71 of file symmetries_finite.c.
typedef unsigned char __uint8_t |
Definition at line 72 of file symmetries_finite.c.
typedef signed short int __int16_t |
Definition at line 73 of file symmetries_finite.c.
typedef unsigned short int __uint16_t |
Definition at line 74 of file symmetries_finite.c.
typedef signed int __int32_t |
Definition at line 75 of file symmetries_finite.c.
typedef unsigned int __uint32_t |
Definition at line 76 of file symmetries_finite.c.
typedef signed long int __int64_t |
Definition at line 78 of file symmetries_finite.c.
typedef unsigned long int __uint64_t |
Definition at line 79 of file symmetries_finite.c.
typedef __int8_t __int_least8_t |
Definition at line 86 of file symmetries_finite.c.
typedef __uint8_t __uint_least8_t |
Definition at line 87 of file symmetries_finite.c.
typedef __int16_t __int_least16_t |
Definition at line 88 of file symmetries_finite.c.
typedef __uint16_t __uint_least16_t |
Definition at line 89 of file symmetries_finite.c.
typedef __int32_t __int_least32_t |
Definition at line 90 of file symmetries_finite.c.
typedef __uint32_t __uint_least32_t |
Definition at line 91 of file symmetries_finite.c.
typedef __int64_t __int_least64_t |
Definition at line 92 of file symmetries_finite.c.
typedef __uint64_t __uint_least64_t |
Definition at line 93 of file symmetries_finite.c.
typedef long int __quad_t |
Definition at line 97 of file symmetries_finite.c.
typedef unsigned long int __u_quad_t |
Definition at line 98 of file symmetries_finite.c.
typedef long int __intmax_t |
Definition at line 106 of file symmetries_finite.c.
typedef unsigned long int __uintmax_t |
Definition at line 107 of file symmetries_finite.c.
typedef unsigned long int __dev_t |
Definition at line 115 of file symmetries_finite.c.
typedef unsigned int __uid_t |
Definition at line 116 of file symmetries_finite.c.
typedef unsigned int __gid_t |
Definition at line 117 of file symmetries_finite.c.
typedef unsigned long int __ino_t |
Definition at line 118 of file symmetries_finite.c.
typedef unsigned long int __ino64_t |
Definition at line 119 of file symmetries_finite.c.
typedef unsigned int __mode_t |
Definition at line 120 of file symmetries_finite.c.
typedef unsigned long int __nlink_t |
Definition at line 121 of file symmetries_finite.c.
typedef long int __off_t |
Definition at line 122 of file symmetries_finite.c.
typedef long int __off64_t |
Definition at line 123 of file symmetries_finite.c.
typedef int __pid_t |
Definition at line 124 of file symmetries_finite.c.
typedef long int __clock_t |
Definition at line 126 of file symmetries_finite.c.
typedef unsigned long int __rlim_t |
Definition at line 127 of file symmetries_finite.c.
typedef unsigned long int __rlim64_t |
Definition at line 128 of file symmetries_finite.c.
typedef unsigned int __id_t |
Definition at line 129 of file symmetries_finite.c.
typedef long int __time_t |
Definition at line 130 of file symmetries_finite.c.
typedef unsigned int __useconds_t |
Definition at line 131 of file symmetries_finite.c.
typedef long int __suseconds_t |
Definition at line 132 of file symmetries_finite.c.
typedef long int __suseconds64_t |
Definition at line 133 of file symmetries_finite.c.
typedef int __daddr_t |
Definition at line 135 of file symmetries_finite.c.
typedef int __key_t |
Definition at line 136 of file symmetries_finite.c.
typedef int __clockid_t |
Definition at line 139 of file symmetries_finite.c.
typedef void* __timer_t |
Definition at line 142 of file symmetries_finite.c.
typedef long int __blksize_t |
Definition at line 145 of file symmetries_finite.c.
typedef long int __blkcnt_t |
Definition at line 150 of file symmetries_finite.c.
typedef long int __blkcnt64_t |
Definition at line 151 of file symmetries_finite.c.
typedef unsigned long int __fsblkcnt_t |
Definition at line 154 of file symmetries_finite.c.
typedef unsigned long int __fsblkcnt64_t |
Definition at line 155 of file symmetries_finite.c.
typedef unsigned long int __fsfilcnt_t |
Definition at line 158 of file symmetries_finite.c.
typedef unsigned long int __fsfilcnt64_t |
Definition at line 159 of file symmetries_finite.c.
typedef long int __fsword_t |
Definition at line 162 of file symmetries_finite.c.
typedef long int __ssize_t |
Definition at line 164 of file symmetries_finite.c.
typedef long int __syscall_slong_t |
Definition at line 167 of file symmetries_finite.c.
typedef unsigned long int __syscall_ulong_t |
Definition at line 169 of file symmetries_finite.c.
Definition at line 173 of file symmetries_finite.c.
typedef char* __caddr_t |
Definition at line 174 of file symmetries_finite.c.
typedef long int __intptr_t |
Definition at line 177 of file symmetries_finite.c.
typedef unsigned int __socklen_t |
Definition at line 180 of file symmetries_finite.c.
typedef int __sig_atomic_t |
Definition at line 185 of file symmetries_finite.c.
typedef float float_t |
Definition at line 208 of file symmetries_finite.c.
typedef double double_t |
Definition at line 209 of file symmetries_finite.c.
typedef long unsigned int size_t |
Definition at line 1109 of file symmetries_finite.c.
typedef __builtin_va_list __gnuc_va_list |
Definition at line 1115 of file symmetries_finite.c.
typedef struct _G_fpos64_t __fpos64_t |
Definition at line 1159 of file symmetries_finite.c.
Definition at line 1168 of file symmetries_finite.c.
typedef void _IO_lock_t |
Definition at line 1180 of file symmetries_finite.c.
typedef __gnuc_va_list va_list |
Definition at line 1239 of file symmetries_finite.c.
Definition at line 1241 of file symmetries_finite.c.
Definition at line 1243 of file symmetries_finite.c.
Definition at line 1250 of file symmetries_finite.c.
typedef __sigset_t sigset_t |
Definition at line 1994 of file symmetries_finite.c.
typedef __suseconds_t suseconds_t |
Definition at line 2038 of file symmetries_finite.c.
typedef long int __fd_mask |
Definition at line 2044 of file symmetries_finite.c.
Definition at line 2064 of file symmetries_finite.c.
typedef __blksize_t blksize_t |
Definition at line 2086 of file symmetries_finite.c.
typedef __blkcnt_t blkcnt_t |
Definition at line 2093 of file symmetries_finite.c.
typedef __fsblkcnt_t fsblkcnt_t |
Definition at line 2097 of file symmetries_finite.c.
typedef __fsfilcnt_t fsfilcnt_t |
Definition at line 2101 of file symmetries_finite.c.
typedef struct __pthread_internal_list __pthread_list_t |
typedef struct __pthread_internal_slist __pthread_slist_t |
typedef unsigned int __tss_t |
Definition at line 2204 of file symmetries_finite.c.
typedef unsigned long int __thrd_t |
Definition at line 2205 of file symmetries_finite.c.
typedef unsigned long int pthread_t |
Definition at line 2215 of file symmetries_finite.c.
typedef unsigned int pthread_key_t |
Definition at line 2237 of file symmetries_finite.c.
typedef int pthread_once_t |
Definition at line 2241 of file symmetries_finite.c.
typedef union pthread_attr_t pthread_attr_t |
Definition at line 2250 of file symmetries_finite.c.
typedef volatile int pthread_spinlock_t |
Definition at line 2291 of file symmetries_finite.c.
typedef struct __locale_struct* __locale_t |
Definition at line 2847 of file symmetries_finite.c.
typedef __locale_t locale_t |
Definition at line 2850 of file symmetries_finite.c.
typedef struct _SYMMETRY_ELEMENT_ SYMMETRY_ELEMENT |
int __fpclassify | ( | double | __value | ) |
int __leaf__ __attribute__ | ( | (__const__) | ) |
int __signbit | ( | double | __value | ) |
int __isinf | ( | double | __value | ) |
int __finite | ( | double | __value | ) |
int __isnan | ( | double | __value | ) |
int __iseqsig | ( | double | __x, |
double | __y | ||
) |
int __issignaling | ( | double | __value | ) |
double acos | ( | double | __x | ) |
double __acos | ( | double | __x | ) |
double asin | ( | double | __x | ) |
double __asin | ( | double | __x | ) |
double atan | ( | double | __x | ) |
double __atan | ( | double | __x | ) |
double atan2 | ( | double | __y, |
double | __x | ||
) |
double __atan2 | ( | double | __y, |
double | __x | ||
) |
double cos | ( | double | __x | ) |
double __cos | ( | double | __x | ) |
double sin | ( | double | __x | ) |
double __sin | ( | double | __x | ) |
double tan | ( | double | __x | ) |
double __tan | ( | double | __x | ) |
double cosh | ( | double | __x | ) |
double __cosh | ( | double | __x | ) |
double sinh | ( | double | __x | ) |
double __sinh | ( | double | __x | ) |
double tanh | ( | double | __x | ) |
double __tanh | ( | double | __x | ) |
double acosh | ( | double | __x | ) |
double __acosh | ( | double | __x | ) |
double asinh | ( | double | __x | ) |
double __asinh | ( | double | __x | ) |
double atanh | ( | double | __x | ) |
double __atanh | ( | double | __x | ) |
double exp | ( | double | __x | ) |
double __exp | ( | double | __x | ) |
double frexp | ( | double | __x, |
int * | __exponent | ||
) |
double __frexp | ( | double | __x, |
int * | __exponent | ||
) |
double ldexp | ( | double | __x, |
int | __exponent | ||
) |
double __ldexp | ( | double | __x, |
int | __exponent | ||
) |
double log | ( | double | __x | ) |
double __log | ( | double | __x | ) |
double log10 | ( | double | __x | ) |
double __log10 | ( | double | __x | ) |
double modf | ( | double | __x, |
double * | __iptr | ||
) |
double __modf | ( | double | __x, |
double * | __iptr | ||
) |
double __leaf__ __attribute__ | ( | (__nonnull__(2)) | ) |
double expm1 | ( | double | __x | ) |
double __expm1 | ( | double | __x | ) |
double log1p | ( | double | __x | ) |
double __log1p | ( | double | __x | ) |
double logb | ( | double | __x | ) |
double __logb | ( | double | __x | ) |
double exp2 | ( | double | __x | ) |
double __exp2 | ( | double | __x | ) |
double log2 | ( | double | __x | ) |
double __log2 | ( | double | __x | ) |
double pow | ( | double | __x, |
double | __y | ||
) |
double __pow | ( | double | __x, |
double | __y | ||
) |
double sqrt | ( | double | __x | ) |
double __sqrt | ( | double | __x | ) |
double hypot | ( | double | __x, |
double | __y | ||
) |
double __hypot | ( | double | __x, |
double | __y | ||
) |
double cbrt | ( | double | __x | ) |
double __cbrt | ( | double | __x | ) |
double ceil | ( | double | __x | ) |
double __ceil | ( | double | __x | ) |
double fabs | ( | double | __x | ) |
double __fabs | ( | double | __x | ) |
double floor | ( | double | __x | ) |
double __floor | ( | double | __x | ) |
double fmod | ( | double | __x, |
double | __y | ||
) |
double __fmod | ( | double | __x, |
double | __y | ||
) |
int isinf | ( | double | __value | ) |
int finite | ( | double | __value | ) |
double drem | ( | double | __x, |
double | __y | ||
) |
double __drem | ( | double | __x, |
double | __y | ||
) |
double significand | ( | double | __x | ) |
double __significand | ( | double | __x | ) |
double copysign | ( | double | __x, |
double | __y | ||
) |
double __copysign | ( | double | __x, |
double | __y | ||
) |
double nan | ( | const char * | __tagb | ) |
double __nan | ( | const char * | __tagb | ) |
int isnan | ( | double | __value | ) |
double j0 | ( | extern double lgamma_r ( | double | ) |
Definition at line 385 of file symmetries_finite.c.
int remove | ( | const char * | __filename | ) |
int rename | ( | const char * | __old, |
const char * | __new | ||
) |
int renameat | ( | int | __oldfd, |
const char * | __old, | ||
int | __newfd, | ||
const char * | __new | ||
) |
int fclose | ( | FILE * | __stream | ) |
FILE * tmpfile | ( | void | ) |
Definition at line 1275 of file symmetries_finite.c.
size_t __ctype_get_mb_cur_max | ( | void | ) |
Definition at line 1701 of file symmetries_finite.c.
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Definition at line 1930 of file symmetries_finite.c.
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Definition at line 1940 of file symmetries_finite.c.
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Definition at line 1952 of file symmetries_finite.c.
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Definition at line 1958 of file symmetries_finite.c.
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Definition at line 1964 of file symmetries_finite.c.
int select | ( | int | __nfds, |
fd_set *__restrict | __readfds, | ||
fd_set *__restrict | __writefds, | ||
fd_set *__restrict | __exceptfds, | ||
struct timeval *__restrict | __timeout | ||
) |
int pselect | ( | int | __nfds, |
fd_set *__restrict | __readfds, | ||
fd_set *__restrict | __writefds, | ||
fd_set *__restrict | __exceptfds, | ||
const struct timespec *__restrict | __timeout, | ||
const __sigset_t *__restrict | __sigmask | ||
) |
long int random | ( | void | ) |
Definition at line 2318 of file symmetries_finite.c.
int random_r | ( | struct random_data *__restrict | __buf, |
int32_t *__restrict | __result | ||
) |
int __leaf__ __attribute__ | ( | (__nonnull__(1, 2)) | ) |
Definition at line 1934 of file getopt_f.c.
int srandom_r | ( | unsigned int | __seed, |
struct random_data * | __buf | ||
) |
int initstate_r | ( | unsigned int | __seed, |
char *__restrict | __statebuf, | ||
size_t | __statelen, | ||
struct random_data *__restrict | __buf | ||
) |
int __leaf__ __attribute__ | ( | (__nonnull__(2, 4)) | ) |
int setstate_r | ( | char *__restrict | __statebuf, |
struct random_data *__restrict | __buf | ||
) |
int rand | ( | void | ) |
Definition at line 2370 of file symmetries_finite.c.
int drand48_r | ( | struct drand48_data *__restrict | __buffer, |
double *__restrict | __result | ||
) |
int erand48_r | ( | unsigned short int | __xsubi[3], |
struct drand48_data *__restrict | __buffer, | ||
double *__restrict | __result | ||
) |
int lrand48_r | ( | struct drand48_data *__restrict | __buffer, |
long int *__restrict | __result | ||
) |
int nrand48_r | ( | unsigned short int | __xsubi[3], |
struct drand48_data *__restrict | __buffer, | ||
long int *__restrict | __result | ||
) |
int mrand48_r | ( | struct drand48_data *__restrict | __buffer, |
long int *__restrict | __result | ||
) |
int jrand48_r | ( | unsigned short int | __xsubi[3], |
struct drand48_data *__restrict | __buffer, | ||
long int *__restrict | __result | ||
) |
int srand48_r | ( | long int | __seedval, |
struct drand48_data * | __buffer | ||
) |
int seed48_r | ( | unsigned short int | __seed16v[3], |
struct drand48_data * | __buffer | ||
) |
int lcong48_r | ( | unsigned short int | __param[7], |
struct drand48_data * | __buffer | ||
) |
__uint32_t arc4random | ( | void | ) |
Definition at line 2454 of file symmetries_finite.c.
int strcoll_l | ( | const char * | __s1, |
const char * | __s2, | ||
locale_t | __l | ||
) |
int __leaf__ __attribute__ | ( | (__pure__) | ) |
Definition at line 2855 of file symmetries_finite.c.
int true | ( | void | ) |
Definition at line 3153 of file symmetries_finite.c.
double pow2 | ( | double | x | ) |
Definition at line 3225 of file symmetries_finite.c.
int establish_pairs | ( | SYMMETRY_ELEMENT * | elem | ) |
Definition at line 3227 of file symmetries_finite.c.
int check_transform_order | ( | SYMMETRY_ELEMENT * | elem | ) |
Definition at line 3292 of file symmetries_finite.c.
int same_transform | ( | SYMMETRY_ELEMENT * | a, |
SYMMETRY_ELEMENT * | b | ||
) |
Definition at line 3335 of file symmetries_finite.c.
SYMMETRY_ELEMENT * alloc_symmetry_element | ( | void | ) |
Definition at line 3360 of file symmetries_finite.c.
void destroy_symmetry_element | ( | SYMMETRY_ELEMENT * | elem | ) |
Definition at line 3404 of file symmetries_finite.c.
int check_transform_quality | ( | SYMMETRY_ELEMENT * | elem | ) |
Definition at line 3420 of file symmetries_finite.c.
double eval_optimization_target_function | ( | SYMMETRY_ELEMENT * | elem, |
int * | finish | ||
) |
Definition at line 3445 of file symmetries_finite.c.
void get_params | ( | SYMMETRY_ELEMENT * | elem, |
double | values[] | ||
) |
Definition at line 3520 of file symmetries_finite.c.
void set_params | ( | SYMMETRY_ELEMENT * | elem, |
double | values[] | ||
) |
Definition at line 3524 of file symmetries_finite.c.
void optimize_transformation_params | ( | SYMMETRY_ELEMENT * | elem | ) |
Definition at line 3528 of file symmetries_finite.c.
int refine_symmetry_element | ( | SYMMETRY_ELEMENT * | elem, |
int | build_table | ||
) |
Definition at line 3690 of file symmetries_finite.c.
void mirror_atom | ( | SYMMETRY_ELEMENT * | plane, |
ATOM * | from, | ||
ATOM * | to | ||
) |
Definition at line 3755 of file symmetries_finite.c.
SYMMETRY_ELEMENT * init_mirror_plane | ( | int | i, |
int | j | ||
) |
Definition at line 3768 of file symmetries_finite.c.
SYMMETRY_ELEMENT * init_ultimate_plane | ( | void | ) |
Definition at line 3823 of file symmetries_finite.c.
void invert_atom | ( | SYMMETRY_ELEMENT * | center, |
ATOM * | from, | ||
ATOM * | to | ||
) |
Definition at line 3928 of file symmetries_finite.c.
SYMMETRY_ELEMENT * init_inversion_center | ( | void | ) |
Definition at line 3937 of file symmetries_finite.c.
void rotate_atom | ( | SYMMETRY_ELEMENT * | axis, |
ATOM * | from, | ||
ATOM * | to | ||
) |
Definition at line 3978 of file symmetries_finite.c.
SYMMETRY_ELEMENT * init_ultimate_axis | ( | void | ) |
Definition at line 4020 of file symmetries_finite.c.
SYMMETRY_ELEMENT * init_c2_axis | ( | int | i, |
int | j, | ||
double | support[3] | ||
) |
Definition at line 4083 of file symmetries_finite.c.
SYMMETRY_ELEMENT * init_axis_parameters | ( | double | a[3], |
double | b[3], | ||
double | c[3] | ||
) |
Definition at line 4179 of file symmetries_finite.c.
SYMMETRY_ELEMENT * init_higher_axis | ( | int | ia, |
int | ib, | ||
int | ic | ||
) |
Definition at line 4326 of file symmetries_finite.c.
void rotate_reflect_atom | ( | SYMMETRY_ELEMENT * | axis, |
ATOM * | from, | ||
ATOM * | to | ||
) |
Definition at line 4372 of file symmetries_finite.c.
SYMMETRY_ELEMENT * init_improper_axis | ( | int | ia, |
int | ib, | ||
int | ic | ||
) |
Definition at line 4414 of file symmetries_finite.c.
void find_center_of_something | ( | void | ) |
Definition at line 4484 of file symmetries_finite.c.
void find_planes | ( | void | ) |
Definition at line 4524 of file symmetries_finite.c.
void destroy_planes | ( | void | ) |
Definition at line 4586 of file symmetries_finite.c.
void find_inversion_centers | ( | void | ) |
Definition at line 4604 of file symmetries_finite.c.
void destroy_inversion_centers | ( | void | ) |
Definition at line 4619 of file symmetries_finite.c.
void find_infinity_axis | ( | void | ) |
Definition at line 4632 of file symmetries_finite.c.
void find_c2_axes | ( | void | ) |
Definition at line 4659 of file symmetries_finite.c.
void destroy_normal_axes | ( | ) |
Definition at line 4797 of file symmetries_finite.c.
void destroy_improper_axes | ( | ) |
Definition at line 4810 of file symmetries_finite.c.
void find_higher_axes | ( | void | ) |
Definition at line 4823 of file symmetries_finite.c.
void find_improper_axes | ( | void | ) |
Definition at line 4869 of file symmetries_finite.c.
void report_planes | ( | void | ) |
Definition at line 4903 of file symmetries_finite.c.
void report_inversion_centers | ( | void | ) |
Definition at line 4924 of file symmetries_finite.c.
void report_axes | ( | void | ) |
Definition at line 4938 of file symmetries_finite.c.
void report_improper_axes | ( | void | ) |
Definition at line 4966 of file symmetries_finite.c.
void report_and_reset_counters | ( | void | ) |
Definition at line 4997 of file symmetries_finite.c.
void find_symmetry_elements | ( | void | ) |
Definition at line 5011 of file symmetries_finite.c.
int compare_axes | ( | const void * | a, |
const void * | b | ||
) |
Definition at line 5047 of file symmetries_finite.c.
void sort_symmetry_elements | ( | void | ) |
Definition at line 5067 of file symmetries_finite.c.
void report_symmetry_elements_verbose | ( | void | ) |
Definition at line 5081 of file symmetries_finite.c.
void summarize_symmetry_elements | ( | void | ) |
Definition at line 5088 of file symmetries_finite.c.
void report_symmetry_elements_brief | ( | ) |
Definition at line 5099 of file symmetries_finite.c.
void identify_point_group | ( | int * | point_group | ) |
Definition at line 5171 of file symmetries_finite.c.
void symmetries_finite_init_ | ( | const int * | natoms, |
const int * | types, | ||
const double * | positions, | ||
const int * | verbosity, | ||
int * | point_group | ||
) |
Definition at line 5215 of file symmetries_finite.c.
void symmetries_finite_get_group_name_ | ( | const int * | point_group, |
char * | name, | ||
unsigned long | l1 | ||
) |
Definition at line 5249 of file symmetries_finite.c.
void symmetries_finite_get_group_elements_ | ( | const int * | point_group, |
char * | elements, | ||
unsigned long | l1 | ||
) |
Definition at line 5256 of file symmetries_finite.c.
void symmetries_finite_end_ | ( | ) |
Definition at line 5263 of file symmetries_finite.c.
int __leaf__ |
Definition at line 240 of file symmetries_finite.c.
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Definition at line 1681 of file symmetries_finite.c.
ATOM |
Definition at line 3052 of file symmetries_finite.c.
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Definition at line 3071 of file symmetries_finite.c.
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Definition at line 3072 of file symmetries_finite.c.
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Definition at line 3073 of file symmetries_finite.c.
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Definition at line 3074 of file symmetries_finite.c.
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Definition at line 3075 of file symmetries_finite.c.
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Definition at line 3076 of file symmetries_finite.c.
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Definition at line 3077 of file symmetries_finite.c.
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Definition at line 3078 of file symmetries_finite.c.
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Definition at line 3079 of file symmetries_finite.c.
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Definition at line 3084 of file symmetries_finite.c.
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Definition at line 3085 of file symmetries_finite.c.
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Definition at line 3086 of file symmetries_finite.c.
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Definition at line 3087 of file symmetries_finite.c.
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Definition at line 3088 of file symmetries_finite.c.
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Definition at line 3089 of file symmetries_finite.c.
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Definition at line 3094 of file symmetries_finite.c.
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Definition at line 3095 of file symmetries_finite.c.
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Definition at line 3100 of file symmetries_finite.c.
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Definition at line 3105 of file symmetries_finite.c.
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Definition at line 3106 of file symmetries_finite.c.
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Definition at line 3111 of file symmetries_finite.c.
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Definition at line 3112 of file symmetries_finite.c.
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Definition at line 3117 of file symmetries_finite.c.
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Definition at line 3118 of file symmetries_finite.c.
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Definition at line 3123 of file symmetries_finite.c.
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Definition at line 3128 of file symmetries_finite.c.
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Definition at line 3133 of file symmetries_finite.c.
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Definition at line 3134 of file symmetries_finite.c.
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Definition at line 3142 of file symmetries_finite.c.
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Definition at line 3143 of file symmetries_finite.c.
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Definition at line 3144 of file symmetries_finite.c.
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Definition at line 3145 of file symmetries_finite.c.
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Definition at line 3146 of file symmetries_finite.c.
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Definition at line 3147 of file symmetries_finite.c.
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Definition at line 3148 of file symmetries_finite.c.
POINT_GROUP PointGroups[] |
Definition at line 3154 of file symmetries_finite.c.
char* PointGroupRejectionReason |
Definition at line 3215 of file symmetries_finite.c.