Octopus
utils.F90
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1!! Copyright (C) 2002-2006 M. Marques, A. Castro, A. Rubio, G. Bertsch
2!! Copyright (C) 2021 S. Ohlmann
3!!
4!! This program is free software; you can redistribute it and/or modify
5!! it under the terms of the GNU General Public License as published by
6!! the Free Software Foundation; either version 2, or (at your option)
7!! any later version.
8!!
9!! This program is distributed in the hope that it will be useful,
10!! but WITHOUT ANY WARRANTY; without even the implied warranty of
11!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12!! GNU General Public License for more details.
13!!
14!! You should have received a copy of the GNU General Public License
15!! along with this program; if not, write to the Free Software
16!! Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
17!! 02110-1301, USA.
18!!
19
20#include "global.h"
21
24
25module utils_oct_m
26 use debug_oct_m
27 use global_oct_m
28 use io_oct_m
29 use iso_c_binding
30 use loct_oct_m
32 use mpi_oct_m
36 use unit_oct_m
38 use string_oct_m
39
40 implicit none
41
42 private
43 public :: &
45 index2axis, &
51 lead_dim, &
55
57 module procedure dleading_dimension_is_known, &
69 end interface leading_dimension_is_known
70
71 interface lead_dim
72 module procedure dlead_dim, zlead_dim
73 module procedure dlead_dim2, zlead_dim2
74 module procedure slead_dim, clead_dim
75 module procedure slead_dim2, clead_dim2
76 end interface lead_dim
77
78contains
79
80 ! ---------------------------------------------------------
81 subroutine get_divisors(nn, n_divisors, divisors)
82 integer, intent(in) :: nn
83 integer, intent(inout) :: n_divisors
84 integer, intent(out) :: divisors(:)
85
86 integer :: ii, max_d
87
88 push_sub(get_divisors)
89
90 assert(n_divisors > 1)
91 max_d = n_divisors
92
93 n_divisors = 1
94 divisors(n_divisors) = 1
95 do ii = 2, nn / 2
96 if (mod(nn, ii) == 0) then
97 n_divisors = n_divisors + 1
98
99 if (n_divisors > max_d - 1) then
100 message(1) = "Internal error in get_divisors. Please increase n_divisors"
101 call messages_fatal(1)
102 end if
103
104 divisors(n_divisors) = ii
105 end if
106 end do
107 n_divisors = n_divisors + 1
108 divisors(n_divisors) = nn
109
110 pop_sub(get_divisors)
111 end subroutine get_divisors
112
113
114 ! ---------------------------------------------------------
115 character pure function index2axis(idir) result(ch)
116 integer, intent(in) :: idir
117
118 select case (idir)
119 case (1)
120 ch = 'x'
121 case (2)
122 ch = 'y'
123 case (3)
124 ch = 'z'
125 case (4)
126 ch = 'w'
127 case default
128 write(ch,'(i1)') idir
129 end select
130
131 end function index2axis
132
133 ! ---------------------------------------------------------
134 pure function index2axisbz(idir) result(ch)
135 integer, intent(in) :: idir
136 character(len=2) :: ch
137
138 select case (idir)
139 case (1)
140 ch = "kx"
141 case (2)
142 ch = "ky"
143 case (3)
144 ch = "kz"
145 case (4)
146 ch = "kw"
147 case default
148 write(ch,'(i2)') idir
149 end select
150
151 end function index2axisbz
152
153
154 ! ---------------------------------------------------------
155 subroutine output_tensor(tensor, ndim, unit, write_average, iunit, namespace)
156 real(real64), intent(in) :: tensor(:,:)
157 integer, intent(in) :: ndim
158 type(unit_t), intent(in) :: unit
159 logical, optional, intent(in) :: write_average
160 integer, optional, intent(in) :: iunit
161 type(namespace_t), optional, intent(in) :: namespace
162
163 real(real64) :: trace
164 integer :: jj, kk
165 logical :: write_average_
167 push_sub(output_tensor)
168
169 write_average_ = optional_default(write_average, .true.)
170
171 trace = m_zero
172 message(1) = ""
173 do jj = 1, ndim
174 do kk = 1, ndim
175 write(message(1), '(a,f20.6)') trim(message(1)), units_from_atomic(unit, tensor(jj, kk))
176 end do
177 trace = trace + tensor(jj, jj)
178 call messages_info(1, iunit=iunit, namespace=namespace)
179 end do
180
181 if (write_average_) then
182 write(message(1), '(a, f20.6)') 'Isotropic average', units_from_atomic(unit, trace/real(ndim, real64) )
183 call messages_info(1, iunit=iunit, namespace=namespace)
184 end if
185
186 pop_sub(output_tensor)
187 end subroutine output_tensor
188
189
190 ! ---------------------------------------------------------
191 subroutine output_dipole(dipole, ndim, iunit, namespace)
192 real(real64), contiguous, intent(in) :: dipole(:)
193 integer, intent(in) :: ndim
194 integer, optional, intent(in) :: iunit
195 type(namespace_t), optional, intent(in) :: namespace
196
197 integer :: idir
198
199 push_sub(output_dipole)
200
201 write(message(1), '(a,a20,a17)') 'Dipole:', '[' // trim(units_abbrev(units_out%length)) // ']', &
202 '[' // trim(units_abbrev(unit_debye)) // ']'
203 do idir = 1, ndim
204 write(message(1+idir), '(6x,3a,es14.5,3x,2es14.5)') '<', index2axis(idir), '> = ', &
205 units_from_atomic(units_out%length, dipole(idir)), units_from_atomic(unit_debye, dipole(idir))
206 end do
207 call messages_info(1+ndim, iunit=iunit, namespace=namespace)
208
209 pop_sub(output_dipole)
210 end subroutine output_dipole
211
214 subroutine print_header()
215 use iso_fortran_env
216
217 character(len=256) :: sys_name
218
219 ! Let us print our logo
220 call io_dump_file(stdout, trim(trim(conf%share) // '/logo'))
221
222 ! Let us print the version
223 message(1) = ""
224 message(2) = str_center("Running octopus", 70)
225 message(3) = ""
226 call messages_info(3)
227
228 message(1) = &
229 "Version : " // trim(conf%version)
230 message(2) = &
231 "Commit : "// trim(conf%git_commit)
232 message(3) = &
233 "Configuration time : "// trim(conf%config_time)
234 call messages_info(3)
235
236 message(1) = 'Configuration options : ' // trim(get_config_opts())
237 message(2) = 'Optional libraries :' // trim(get_optional_libraries())
238
239 message(3) = 'Architecture : ' + tostring(oct_arch)
240 call messages_info(3)
241
243
244 message(1) = &
245 "C compiler : "//trim(conf%cc)
246 message(2) = &
247 "C compiler flags : "//trim(conf%cflags)
248 message(3) = &
249 "C++ compiler : "//trim(conf%cxx)
250 message(4) = &
251 "C++ compiler flags : "//trim(conf%cxxflags)
252#ifdef HAVE_FC_COMPILER_VERSION
253 message(5) = "Fortran compiler : "//trim(conf%fc) //" ("//compiler_version()//")"
254#else
255 message(5) = "Fortran compiler : "//trim(conf%fc)
256#endif
257 message(6) = &
258 "Fortran compiler flags : "//trim(conf%fcflags)
259 call messages_info(6)
260
261 message(1) = ""
262 call messages_info(1)
263
264 ! Let us print where we are running
265 call loct_sysname(sys_name)
266 write(message(1), '(a)') "The octopus is swimming in " // trim(sys_name)
267 message(2) = ""
268 call messages_info(2)
269
270 call mpi_world%barrier()
271
272 call print_date("Calculation started on ")
273 end subroutine print_header
274
275
279 character(len=256) function get_config_opts()
280
281 get_config_opts = ''
282#ifdef HAVE_OPENMP
283 get_config_opts = trim(get_config_opts)//' openmp'
284#endif
285#ifdef HAVE_MPI
287#endif
288#ifdef HAVE_CUDA
289 get_config_opts = trim(get_config_opts)//' cuda'
290#endif
291#ifdef HAVE_CUDA_MPI
292 get_config_opts = trim(get_config_opts)//' cuda-mpi'
293#endif
294#ifdef HAVE_LIBXC_KXC
295 get_config_opts = trim(get_config_opts)//' libxc_kxc'
296#endif
297#ifdef HAVE_LIBXC_FUNCS
298 get_config_opts = trim(get_config_opts)//' libxc_funcs'
299#endif
300#ifdef HAVE_LIBXC_DEVICE
301 get_config_opts = trim(get_config_opts)//' libxc_device'
302#endif
303#ifdef HAVE_HIP
304 get_config_opts = trim(get_config_opts)//' hip'
305#endif
306#ifdef HAVE_FFTW3_THREADS
307 get_config_opts = trim(get_config_opts)//' fftw3_threads'
308#endif
309#ifdef HAVE_CUBIN
310 get_config_opts = trim(get_config_opts)//' cubin'
311#endif
312#ifdef HAVE_NVTX
313 get_config_opts = trim(get_config_opts)//' nvtx'
314#endif
315
316 end function get_config_opts
317
321 character(len=256) function get_optional_libraries()
322
323 ! keep in alphabetical order, for ease in seeing if something is listed
325#ifdef HAVE_ADIOS2
327#endif
328#ifdef HAVE_BERKELEYGW
330#endif
331#ifdef HAVE_CGAL
333#endif
334#ifdef HAVE_DFTBPLUS
336#endif
337#ifdef HAVE_ELPA
339#endif
340#ifdef HAVE_LIKWID
342#endif
343#ifdef HAVE_LIBVDWXC
345#endif
346#ifdef HAVE_LIBVDWXC_MPI
347 get_optional_libraries = trim(get_optional_libraries)//' libvdwxc_mpi'
348#endif
349#ifdef HAVE_MATTERSIM
351#endif
352#ifdef HAVE_METIS
354#endif
355#ifdef HAVE_NETCDF
357#endif
358#ifdef HAVE_NFFT
360#endif
361#ifdef HAVE_PARMETIS
363#endif
364#ifdef HAVE_PFFT
366#endif
367#ifdef HAVE_PNFFT
369#endif
370#ifdef HAVE_PSOLVER
372#endif
373#ifdef HAVE_PSPIO
375#endif
376#ifdef HAVE_SCALAPACK
378#endif
379#ifdef HAVE_SPARSKIT
381#endif
382#ifdef HAVE_NLOPT
384#endif
385#ifdef HAVE_VERROU
387#endif
388#ifdef HAVE_WANNIER90
390#endif
391
393
394 ! ---------------------------------------------------------
395
396 logical function dleading_dimension_is_known(array) result(known)
397 real(real64), target, intent(in) :: array(:, :)
398
399 integer(c_intptr_t) :: addr1, addr2
400
401 known = .true.
402
403 if (ubound(array, dim = 2) > 1) then
404 addr1 = transfer(c_loc(array(1,1)), 0_c_intptr_t)
405 addr2 = transfer(c_loc(array(1,2)), 0_c_intptr_t)
406 known = ubound(array, dim = 1) == (addr2-addr1)/c_sizeof(array(1, 1))
407 end if
408
409 end function dleading_dimension_is_known
411
412 ! ---------------------------------------------------------
413
414 logical function zleading_dimension_is_known(array) result(known)
415 complex(real64), target, intent(in) :: array(:, :)
416
417 integer(c_intptr_t) :: addr1, addr2
418
419 known = .true.
420
421 if (ubound(array, dim = 2) > 1) then
422 addr1 = transfer(c_loc(array(1,1)), 0_c_intptr_t)
423 addr2 = transfer(c_loc(array(1,2)), 0_c_intptr_t)
424 known = ubound(array, dim = 1) == (addr2-addr1)/c_sizeof(array(1, 1))
425 end if
426
428
429 ! ---------------------------------------------------------
430
431 logical function ileading_dimension_is_known(array) result(known)
432 integer, target, intent(in) :: array(:, :)
433
434 integer(c_intptr_t) :: addr1, addr2
435
436 known = .true.
437
438 if (ubound(array, dim = 2) > 1) then
439 addr1 = transfer(c_loc(array(1,1)), 0_c_intptr_t)
440 addr2 = transfer(c_loc(array(1,2)), 0_c_intptr_t)
441
442 known = ubound(array, dim = 1) == (addr2-addr1)/c_sizeof(array(1, 1))
443 end if
445 end function ileading_dimension_is_known
446
447
448 logical function lleading_dimension_is_known(array) result(known)
449 integer(int64), target, intent(in) :: array(:, :)
450
451 integer(c_intptr_t) :: addr1, addr2
452
453 known = .true.
454
455 if (ubound(array, dim = 2) > 1) then
456 addr1 = transfer(c_loc(array(1,1)), 0_c_intptr_t)
457 addr2 = transfer(c_loc(array(1,2)), 0_c_intptr_t)
458
459 known = ubound(array, dim = 1) == (addr2-addr1)/c_sizeof(array(1, 1))
460 end if
461
462 end function lleading_dimension_is_known
464
465 ! ---------------------------------------------------------
466
467 logical function sleading_dimension_is_known(array) result(known)
468 real(real32), target, intent(in) :: array(:, :)
469
470 integer(c_intptr_t) :: addr1, addr2
471
472 known = .true.
473
474 if (ubound(array, dim = 2) > 1) then
475 addr1 = transfer(c_loc(array(1,1)), 0_c_intptr_t)
476 addr2 = transfer(c_loc(array(1,2)), 0_c_intptr_t)
477 known = ubound(array, dim = 1) == (addr2-addr1)/c_sizeof(array(1, 1))
478 end if
479
480 end function sleading_dimension_is_known
482
483 ! ---------------------------------------------------------
484
485 logical function cleading_dimension_is_known(array) result(known)
486 complex(real32), target, intent(in) :: array(:, :)
487
488 integer(c_intptr_t) :: addr1, addr2
489
490 known = .true.
491
492 if (ubound(array, dim = 2) > 1) then
493 addr1 = transfer(c_loc(array(1,1)), 0_c_intptr_t)
494 addr2 = transfer(c_loc(array(1,2)), 0_c_intptr_t)
495 known = ubound(array, dim = 1) == (addr2-addr1)/c_sizeof(array(1, 1))
496 end if
497
498 end function cleading_dimension_is_known
500
501 ! ---------------------------------------------------------
502
503 logical function dleading_dimension_is_known2(array) result(known)
504 real(real64), target, intent(in) :: array(:, :, :)
505
506 integer(c_intptr_t) :: addr1, addr2
507
508 known = .true.
509
510 if (ubound(array, dim = 2) > 1) then
511 addr1 = transfer(c_loc(array(1,1,1)), 0_c_intptr_t)
512 addr2 = transfer(c_loc(array(1,2,1)), 0_c_intptr_t)
513 known = ubound(array, dim = 1) == (addr2 - addr1)/c_sizeof(array(1, 1, 1))
514 end if
515
518
519 ! ---------------------------------------------------------
520
521 logical function zleading_dimension_is_known2(array) result(known)
522 complex(real64), target, intent(in) :: array(:, :, :)
523
524 integer(c_intptr_t) :: addr1, addr2
525
526 known = .true.
527
528 if (ubound(array, dim = 2) > 1) then
529 addr1 = transfer(c_loc(array(1,1,1)), 0_c_intptr_t)
530 addr2 = transfer(c_loc(array(1,2,1)), 0_c_intptr_t)
531 known = ubound(array, dim = 1) == (addr2 - addr1)/c_sizeof(array(1, 1, 1))
532 end if
533
535
536 ! ---------------------------------------------------------
537
538 logical function ileading_dimension_is_known2(array) result(known)
539 integer, target, intent(in) :: array(:, :, :)
540
541 integer(c_intptr_t) :: addr1, addr2
542
543 known = .true.
544
545 if (ubound(array, dim = 2) > 1) then
546 addr1 = transfer(c_loc(array(1,1,1)), 0_c_intptr_t)
547 addr2 = transfer(c_loc(array(1,2,1)), 0_c_intptr_t)
548 known = ubound(array, dim = 1) == (addr2 - addr1)/c_sizeof(array(1, 1, 1))
549 end if
552
553
554 logical function lleading_dimension_is_known2(array) result(known)
555 integer(int64), target, intent(in) :: array(:, :, :)
556
557 integer(c_intptr_t) :: addr1, addr2
558
559 known = .true.
560
561 if (ubound(array, dim = 2) > 1) then
562 addr1 = transfer(c_loc(array(1,1,1)), 0_c_intptr_t)
563 addr2 = transfer(c_loc(array(1,2,1)), 0_c_intptr_t)
564 known = ubound(array, dim = 1) == (addr2 - addr1)/c_sizeof(array(1, 1, 1))
565 end if
566
568
569 ! ---------------------------------------------------------
570
571 logical function sleading_dimension_is_known2(array) result(known)
572 real(real32), target, intent(in) :: array(:, :, :)
573
574 integer(c_intptr_t) :: addr1, addr2
575
576 known = .true.
577
578 if (ubound(array, dim = 2) > 1) then
579 addr1 = transfer(c_loc(array(1,1,1)), 0_c_intptr_t)
580 addr2 = transfer(c_loc(array(1,2,1)), 0_c_intptr_t)
581 known = ubound(array, dim = 1) == (addr2 - addr1)/c_sizeof(array(1, 1, 1))
582 end if
583
585
586 ! ---------------------------------------------------------
587
588 logical function cleading_dimension_is_known2(array) result(known)
589 complex(real32), target, intent(in) :: array(:, :, :)
590
591 integer(c_intptr_t) :: addr1, addr2
592
593 known = .true.
594
595 if (ubound(array, dim = 2) > 1) then
596 addr1 = transfer(c_loc(array(1,1,1)), 0_c_intptr_t)
597 addr2 = transfer(c_loc(array(1,2,1)), 0_c_intptr_t)
598 known = ubound(array, dim = 1) == (addr2 - addr1)/c_sizeof(array(1, 1, 1))
599 end if
600
602
603 ! ---------------------------------------------------------
604
605 integer function dlead_dim(array) result(lead_dim)
606 real(real64), intent(in) :: array(:, :)
607
608 assert(leading_dimension_is_known(array))
609
610 lead_dim = ubound(array, dim = 1)
611 end function dlead_dim
612
613 ! ---------------------------------------------------------
614
615 integer function zlead_dim(array) result(lead_dim)
616 complex(real64), intent(in) :: array(:, :)
617
618 assert(leading_dimension_is_known(array))
619
620 lead_dim = ubound(array, dim = 1)
621 end function zlead_dim
622
623 ! ---------------------------------------------------------
624
625 integer function dlead_dim2(array) result(lead_dim)
626 real(real64), intent(in) :: array(:, :, :)
627
628 assert(leading_dimension_is_known(array))
629
630 lead_dim = ubound(array, dim = 1) * ubound(array, dim = 2)
631 end function dlead_dim2
632
633 ! ---------------------------------------------------------
634
635 integer function zlead_dim2(array) result(lead_dim)
636 complex(real64), intent(in) :: array(:, :, :)
637
638 assert(leading_dimension_is_known(array))
639
640 lead_dim = ubound(array, dim = 1) * ubound(array, dim = 2)
641 end function zlead_dim2
642
643 ! ---------------------------------------------------------
644
645 integer function slead_dim(array) result(lead_dim)
646 real(real32), intent(in) :: array(:, :)
647
648 assert(leading_dimension_is_known(array))
649
650 lead_dim = ubound(array, dim = 1)
651 end function slead_dim
652
653 ! ---------------------------------------------------------
654
655 integer function clead_dim(array) result(lead_dim)
656 complex(real32), intent(in) :: array(:, :)
657
658 assert(leading_dimension_is_known(array))
659
660 lead_dim = ubound(array, dim = 1)
661 end function clead_dim
662
663 ! ---------------------------------------------------------
664
665 integer function slead_dim2(array) result(lead_dim)
666 real(real32), intent(in) :: array(:, :, :)
667
668 assert(leading_dimension_is_known(array))
669
670 lead_dim = ubound(array, dim = 1) * ubound(array, dim = 2)
671 end function slead_dim2
672
673 ! ---------------------------------------------------------
674
675 integer function clead_dim2(array) result(lead_dim)
676 complex(real32), intent(in) :: array(:, :, :)
677
678 assert(leading_dimension_is_known(array))
680 lead_dim = ubound(array, dim = 1) * ubound(array, dim = 2)
681 end function clead_dim2
682
683 subroutine make_array_larger(array, new_size)
684 integer(int64), allocatable, intent(inout) :: array(:)
685 integer, intent(in) :: new_size
686
687 integer(int64), allocatable :: tmp(:)
688 integer :: copy_size
689
690 push_sub(make_array_larger)
691
692 ! Use allocate here as move_alloc deallocate internally the from array
693 allocate(tmp(1:new_size))
694 copy_size = min(new_size, size(array))
695 tmp(1:copy_size) = array(1:copy_size)
696 safe_deallocate_a(array)
697 call move_alloc(tmp, array)
698
700 end subroutine make_array_larger
701
703 subroutine write_vectorization_level()
704 character(len=32) :: vec
705 character(kind=c_char) :: c_str(33)
706
707 c_str = c_null_char
708 call get_vectorization_level(c_str)
709 call string_c_to_f(c_str, vec)
710 message(1) = 'Vectorization level : ' // trim(vec)
711 call messages_info(1)
712
713 end subroutine write_vectorization_level
714
715end module utils_oct_m
716
717!! Local Variables:
718!! mode: f90
719!! coding: utf-8
720!! End:
Definition: io.F90:116
System information (time, memory, sysname)
Definition: loct.F90:117
character(len=256), dimension(max_lines), public message
to be output by fatal, warning
Definition: messages.F90:162
subroutine, public messages_fatal(no_lines, only_root_writes, namespace)
Definition: messages.F90:410
This module contains interfaces for routines in operate.c.
Definition: operate_f.F90:119
brief This module defines the class unit_t which is used by the unit_systems_oct_m module.
Definition: unit.F90:134
This module defines the unit system, used for input and output.
This module is intended to contain simple general-purpose utility functions and procedures.
Definition: utils.F90:120
subroutine, public output_tensor(tensor, ndim, unit, write_average, iunit, namespace)
Definition: utils.F90:251
character(len=256) function, public get_config_opts()
Character string containing compile-time options.
Definition: utils.F90:375
logical function cleading_dimension_is_known(array)
Definition: utils.F90:482
integer function zlead_dim2(array)
Definition: utils.F90:632
subroutine write_vectorization_level()
Prints the level of vectorization used for the vectorized finite differences.
Definition: utils.F90:700
subroutine, public output_dipole(dipole, ndim, iunit, namespace)
Definition: utils.F90:287
logical function zleading_dimension_is_known2(array)
Definition: utils.F90:518
logical function lleading_dimension_is_known(array)
Definition: utils.F90:445
logical function zleading_dimension_is_known(array)
Definition: utils.F90:411
subroutine, public get_divisors(nn, n_divisors, divisors)
Definition: utils.F90:177
integer function dlead_dim(array)
Definition: utils.F90:602
subroutine, public make_array_larger(array, new_size)
Definition: utils.F90:680
integer function clead_dim(array)
Definition: utils.F90:652
logical function dleading_dimension_is_known2(array)
Definition: utils.F90:500
character(len=256) function, public get_optional_libraries()
Character string containing optional external libraries.
Definition: utils.F90:384
logical function ileading_dimension_is_known(array)
Definition: utils.F90:428
integer function dlead_dim2(array)
Definition: utils.F90:622
integer function slead_dim2(array)
Definition: utils.F90:662
logical function cleading_dimension_is_known2(array)
Definition: utils.F90:585
character pure function, public index2axis(idir)
Definition: utils.F90:211
integer function clead_dim2(array)
Definition: utils.F90:672
logical function lleading_dimension_is_known2(array)
Definition: utils.F90:551
integer function slead_dim(array)
Definition: utils.F90:642
logical function ileading_dimension_is_known2(array)
Definition: utils.F90:535
logical function sleading_dimension_is_known(array)
Definition: utils.F90:464
pure character(len=2) function, public index2axisbz(idir)
Definition: utils.F90:230
subroutine, public print_header()
This subroutine prints the logo followed by information about the compilation and the system....
Definition: utils.F90:310
logical function sleading_dimension_is_known2(array)
Definition: utils.F90:568
integer function zlead_dim(array)
Definition: utils.F90:612
logical function dleading_dimension_is_known(array)
Definition: utils.F90:393
void get_vectorization_level(char *level)
Definition: operate.c:1492
int true(void)