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Octopus
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Data Types | |
| interface | submesh_add_to_mesh |
| type | submesh_t |
| A submesh is a type of mesh, used for the projectors in the pseudopotentials It contains points on a regular mesh confined to a sphere of a given radius. More... | |
| interface | submesh_to_mesh_dotp |
Functions/Subroutines | |
| recursive real(real64) function | f_n (dims) |
| subroutine, public | submesh_init (this, space, mesh, latt, center, rc) |
| subroutine | submesh_get_vol_pp (this) |
| Gather the per-point volume elements of the sphere from the mesh. More... | |
| subroutine | submesh_reorder_points (this, space, xtmp, rtmp) |
| subroutine, public | submesh_merge (this, space, mesh, sm1, sm2, shift) |
| subroutine, public | submesh_shift_center (this, space, newcenter) |
| subroutine, public | submesh_broadcast (this, space, mesh, center, radius, root, mpi_grp) |
| logical function, public | submesh_compatible (this, radius, center, dx) |
| subroutine, public | submesh_end (this) |
| logical function, public | submesh_overlap (sm1, sm2, space) |
| subroutine, public | submesh_build_global (this, space) |
| subroutine, public | submesh_end_global (this) |
| subroutine | zzsubmesh_add_to_mesh (this, sphi, phi, factor) |
| complex(real64) function | zzsubmesh_to_mesh_dotp (this, sphi, phi, reduce) |
| subroutine, public | submesh_get_cube_dim (sm, space, db) |
| finds the dimension of a box containing the submesh More... | |
| subroutine, public | submesh_init_cube_map (sm, space) |
| subroutine, public | submesh_end_cube_map (sm) |
| subroutine, public | dzsubmesh_batch_add (this, ss, mm) |
| The following function takes a batch of functions defined in submesh (ss) and adds one of them to each of the mesh functions in other batch (mm). Each one is multiplied by a factor given by the array factor. In this version of the routine, the submesh batch is real and the mesh batch is complex. More... | |
| real(real64) function, public | dsm_integrate (mesh, sm, ff, reduce) |
| real(real64) function, public | dsm_integrate_frommesh (mesh, sm, ff, reduce) |
| subroutine | ddsubmesh_add_to_mesh (this, sphi, phi, factor) |
| subroutine, public | dsubmesh_copy_from_mesh (this, phi, sphi, conjugate) |
| real(real64) function, public | dsm_nrm2 (sm, ff, reduce) |
| this function returns the the norm of a vector More... | |
| real(real64) function, public | dsubmesh_dotp (this, f1, f2, reduce) |
| dot product of two functions defined on the submesh More... | |
| real(real64) function | ddsubmesh_to_mesh_dotp (this, sphi, phi, reduce) |
| subroutine, public | dsubmesh_batch_add_matrix (this, factor, ss, mm) |
| The following functions takes a batch of functions defined in submesh (ss) and adds all of them to each of the mesh functions in other batch (mm). Each one is multiplied by a factor given by the array 'factor'. More... | |
| subroutine, public | dsubmesh_batch_add (this, ss, mm) |
| The following function takes a batch of functions defined in submesh (ss) and adds one of them to each of the mesh functions in other batch (mm). Each one is multiplied by a factor given by the array factor. More... | |
| subroutine, public | dsubmesh_batch_dotp_matrix (this, mm, ss, dot, reduce) |
| complex(real64) function, public | zsm_integrate (mesh, sm, ff, reduce) |
| complex(real64) function, public | zsm_integrate_frommesh (mesh, sm, ff, reduce) |
| subroutine | zdsubmesh_add_to_mesh (this, sphi, phi, factor) |
| subroutine, public | zsubmesh_copy_from_mesh (this, phi, sphi, conjugate) |
| real(real64) function, public | zsm_nrm2 (sm, ff, reduce) |
| this function returns the the norm of a vector More... | |
| complex(real64) function, public | zsubmesh_dotp (this, f1, f2, reduce) |
| dot product of two functions defined on the submesh More... | |
| complex(real64) function | zdsubmesh_to_mesh_dotp (this, sphi, phi, reduce) |
| subroutine, public | zsubmesh_batch_add_matrix (this, factor, ss, mm) |
| The following functions takes a batch of functions defined in submesh (ss) and adds all of them to each of the mesh functions in other batch (mm). Each one is multiplied by a factor given by the array 'factor'. More... | |
| subroutine, public | zsubmesh_batch_add (this, ss, mm) |
| The following function takes a batch of functions defined in submesh (ss) and adds one of them to each of the mesh functions in other batch (mm). Each one is multiplied by a factor given by the array factor. More... | |
| subroutine, public | zsubmesh_batch_dotp_matrix (this, mm, ss, dot, reduce) |
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private |
Definition at line 215 of file submesh.F90.
| subroutine, public submesh_oct_m::submesh_init | ( | type(submesh_t), intent(inout) | this, |
| class(space_t), intent(in) | space, | ||
| class(mesh_t), intent(in), target | mesh, | ||
| type(lattice_vectors_t), intent(in) | latt, | ||
| real(real64), dimension(1:space%dim), intent(in) | center, | ||
| real(real64), intent(in) | rc | ||
| ) |
Definition at line 229 of file submesh.F90.
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private |
Gather the per-point volume elements of the sphere from the mesh.
The submesh arrays are in submesh order, so the weights have to be taken at the mesh point each sphere point maps to.
Definition at line 393 of file submesh.F90.
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private |
Definition at line 412 of file submesh.F90.
| subroutine, public submesh_oct_m::submesh_merge | ( | type(submesh_t), intent(inout) | this, |
| class(space_t), intent(in) | space, | ||
| class(mesh_t), intent(in), target | mesh, | ||
| type(submesh_t), intent(in) | sm1, | ||
| type(submesh_t), intent(in) | sm2, | ||
| real(real64), dimension(:), intent(in), optional | shift | ||
| ) |
| [in,out] | this | valgrind objects to intent(out) due to the initializations above |
| [in] | shift | If present, shifts the center of sm2 |
Definition at line 538 of file submesh.F90.
| subroutine, public submesh_oct_m::submesh_shift_center | ( | type(submesh_t), intent(inout) | this, |
| class(space_t), intent(in) | space, | ||
| real(real64), dimension(:), intent(in) | newcenter | ||
| ) |
Definition at line 606 of file submesh.F90.
| subroutine, public submesh_oct_m::submesh_broadcast | ( | type(submesh_t), intent(inout) | this, |
| class(space_t), intent(in) | space, | ||
| type(mesh_t), intent(in), target | mesh, | ||
| real(real64), dimension(1:space%dim), intent(in) | center, | ||
| real(real64), intent(in) | radius, | ||
| integer, intent(in) | root, | ||
| type(mpi_grp_t), intent(in) | mpi_grp | ||
| ) |
Definition at line 633 of file submesh.F90.
| logical function, public submesh_oct_m::submesh_compatible | ( | type(submesh_t), intent(in) | this, |
| real(real64), intent(in) | radius, | ||
| real(real64), dimension(:), intent(in) | center, | ||
| real(real64), intent(in) | dx | ||
| ) |
At the moment the center check doesnt matter because everywhere submeshes are recycled at the moment, between uses, the position doesnt change
Definition at line 695 of file submesh.F90.
| subroutine, public submesh_oct_m::submesh_end | ( | type(submesh_t), intent(inout) | this | ) |
Definition at line 713 of file submesh.F90.
| logical function, public submesh_oct_m::submesh_overlap | ( | type(submesh_t), intent(in) | sm1, |
| type(submesh_t), intent(in) | sm2, | ||
| class(space_t), intent(in) | space | ||
| ) |
Definition at line 739 of file submesh.F90.
| subroutine, public submesh_oct_m::submesh_build_global | ( | type(submesh_t), intent(inout) | this, |
| class(space_t), intent(in) | space | ||
| ) |
Definition at line 782 of file submesh.F90.
| subroutine, public submesh_oct_m::submesh_end_global | ( | type(submesh_t), intent(inout) | this | ) |
Definition at line 833 of file submesh.F90.
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private |
Definition at line 848 of file submesh.F90.
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private |
Definition at line 891 of file submesh.F90.
| subroutine, public submesh_oct_m::submesh_get_cube_dim | ( | type(submesh_t), intent(in), target | sm, |
| class(space_t), intent(in) | space, | ||
| integer, dimension(1:space%dim), intent(out) | db | ||
| ) |
finds the dimension of a box containing the submesh
Definition at line 934 of file submesh.F90.
| subroutine, public submesh_oct_m::submesh_init_cube_map | ( | type(submesh_t), intent(inout), target | sm, |
| class(space_t), intent(in) | space | ||
| ) |
Definition at line 969 of file submesh.F90.
| subroutine, public submesh_oct_m::submesh_end_cube_map | ( | type(submesh_t), intent(inout) | sm | ) |
Definition at line 1008 of file submesh.F90.
| subroutine, public submesh_oct_m::dzsubmesh_batch_add | ( | type(submesh_t), intent(in) | this, |
| class(batch_t), intent(in) | ss, | ||
| class(batch_t), intent(inout) | mm | ||
| ) |
The following function takes a batch of functions defined in submesh (ss) and adds one of them to each of the mesh functions in other batch (mm). Each one is multiplied by a factor given by the array factor. In this version of the routine, the submesh batch is real and the mesh batch is complex.
Definition at line 1024 of file submesh.F90.
| real(real64) function, public submesh_oct_m::dsm_integrate | ( | class(mesh_t), intent(in) | mesh, |
| type(submesh_t), intent(in) | sm, | ||
| real(real64), dimension(:), intent(in), optional, contiguous | ff, | ||
| logical, intent(in), optional | reduce | ||
| ) |
Definition at line 1128 of file submesh.F90.
| real(real64) function, public submesh_oct_m::dsm_integrate_frommesh | ( | type(mesh_t), intent(in) | mesh, |
| type(submesh_t), intent(in) | sm, | ||
| real(real64), dimension(:), intent(in), optional, contiguous | ff, | ||
| logical, intent(in), optional | reduce | ||
| ) |
Definition at line 1173 of file submesh.F90.
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private |
Definition at line 1218 of file submesh.F90.
| subroutine, public submesh_oct_m::dsubmesh_copy_from_mesh | ( | type(submesh_t), intent(in) | this, |
| real(real64), dimension(:), intent(in), contiguous | phi, | ||
| real(real64), dimension(:), intent(out), contiguous | sphi, | ||
| logical, intent(in), optional | conjugate | ||
| ) |
Definition at line 1266 of file submesh.F90.
| real(real64) function, public submesh_oct_m::dsm_nrm2 | ( | type(submesh_t), intent(in) | sm, |
| real(real64), dimension(:), intent(in), contiguous | ff, | ||
| logical, intent(in), optional | reduce | ||
| ) |
this function returns the the norm of a vector
Definition at line 1296 of file submesh.F90.
| real(real64) function, public submesh_oct_m::dsubmesh_dotp | ( | type(submesh_t), intent(in) | this, |
| real(real64), dimension(:), intent(in) | f1, | ||
| real(real64), dimension(:), intent(in) | f2, | ||
| logical, intent(in), optional | reduce | ||
| ) |
dot product of two functions defined on the submesh
Both arrays are in submesh order, so the per-point volume elements are the ones gathered on the sphere. dmf_dotp with np= cannot be used in that case, as it would index meshvol_pp by the submesh index instead of the mesh index.
Definition at line 1336 of file submesh.F90.
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private |
Definition at line 1380 of file submesh.F90.
| subroutine, public submesh_oct_m::dsubmesh_batch_add_matrix | ( | type(submesh_t), intent(in) | this, |
| real(real64), dimension(:, :), intent(in) | factor, | ||
| class(batch_t), intent(in) | ss, | ||
| class(batch_t), intent(inout) | mm | ||
| ) |
The following functions takes a batch of functions defined in submesh (ss) and adds all of them to each of the mesh functions in other batch (mm). Each one is multiplied by a factor given by the array 'factor'.
Definition at line 1425 of file submesh.F90.
| subroutine, public submesh_oct_m::dsubmesh_batch_add | ( | type(submesh_t), intent(in) | this, |
| class(batch_t), intent(in) | ss, | ||
| class(batch_t), intent(inout) | mm | ||
| ) |
The following function takes a batch of functions defined in submesh (ss) and adds one of them to each of the mesh functions in other batch (mm). Each one is multiplied by a factor given by the array factor.
Definition at line 1518 of file submesh.F90.
| subroutine, public submesh_oct_m::dsubmesh_batch_dotp_matrix | ( | type(submesh_t), intent(in) | this, |
| class(batch_t), intent(in) | mm, | ||
| class(batch_t), intent(in) | ss, | ||
| real(real64), dimension(:, :), intent(inout), contiguous | dot, | ||
| logical, intent(in), optional | reduce | ||
| ) |
Definition at line 1570 of file submesh.F90.
| complex(real64) function, public submesh_oct_m::zsm_integrate | ( | class(mesh_t), intent(in) | mesh, |
| type(submesh_t), intent(in) | sm, | ||
| complex(real64), dimension(:), intent(in), optional, contiguous | ff, | ||
| logical, intent(in), optional | reduce | ||
| ) |
Definition at line 1729 of file submesh.F90.
| complex(real64) function, public submesh_oct_m::zsm_integrate_frommesh | ( | type(mesh_t), intent(in) | mesh, |
| type(submesh_t), intent(in) | sm, | ||
| complex(real64), dimension(:), intent(in), optional, contiguous | ff, | ||
| logical, intent(in), optional | reduce | ||
| ) |
Definition at line 1774 of file submesh.F90.
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private |
Definition at line 1819 of file submesh.F90.
| subroutine, public submesh_oct_m::zsubmesh_copy_from_mesh | ( | type(submesh_t), intent(in) | this, |
| complex(real64), dimension(:), intent(in), contiguous | phi, | ||
| complex(real64), dimension(:), intent(out), contiguous | sphi, | ||
| logical, intent(in), optional | conjugate | ||
| ) |
Definition at line 1867 of file submesh.F90.
| real(real64) function, public submesh_oct_m::zsm_nrm2 | ( | type(submesh_t), intent(in) | sm, |
| complex(real64), dimension(:), intent(in), contiguous | ff, | ||
| logical, intent(in), optional | reduce | ||
| ) |
this function returns the the norm of a vector
Definition at line 1897 of file submesh.F90.
| complex(real64) function, public submesh_oct_m::zsubmesh_dotp | ( | type(submesh_t), intent(in) | this, |
| complex(real64), dimension(:), intent(in) | f1, | ||
| complex(real64), dimension(:), intent(in) | f2, | ||
| logical, intent(in), optional | reduce | ||
| ) |
dot product of two functions defined on the submesh
Both arrays are in submesh order, so the per-point volume elements are the ones gathered on the sphere. zmf_dotp with np= cannot be used in that case, as it would index meshvol_pp by the submesh index instead of the mesh index.
Definition at line 1937 of file submesh.F90.
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private |
Definition at line 1981 of file submesh.F90.
| subroutine, public submesh_oct_m::zsubmesh_batch_add_matrix | ( | type(submesh_t), intent(in) | this, |
| complex(real64), dimension(:, :), intent(in) | factor, | ||
| class(batch_t), intent(in) | ss, | ||
| class(batch_t), intent(inout) | mm | ||
| ) |
The following functions takes a batch of functions defined in submesh (ss) and adds all of them to each of the mesh functions in other batch (mm). Each one is multiplied by a factor given by the array 'factor'.
Definition at line 2026 of file submesh.F90.
| subroutine, public submesh_oct_m::zsubmesh_batch_add | ( | type(submesh_t), intent(in) | this, |
| class(batch_t), intent(in) | ss, | ||
| class(batch_t), intent(inout) | mm | ||
| ) |
The following function takes a batch of functions defined in submesh (ss) and adds one of them to each of the mesh functions in other batch (mm). Each one is multiplied by a factor given by the array factor.
Definition at line 2119 of file submesh.F90.
| subroutine, public submesh_oct_m::zsubmesh_batch_dotp_matrix | ( | type(submesh_t), intent(in) | this, |
| class(batch_t), intent(in) | mm, | ||
| class(batch_t), intent(in) | ss, | ||
| complex(real64), dimension(:, :), intent(inout), contiguous | dot, | ||
| logical, intent(in), optional | reduce | ||
| ) |
Definition at line 2171 of file submesh.F90.