44 use,
intrinsic :: iso_fortran_env
108 integer,
parameter,
public :: &
114 type(propagator_base_t),
public :: tr
115 type(scf_t),
public :: scf
116 type(ion_dynamics_t),
public :: ions_dyn
117 real(real64),
public :: dt
118 integer,
public :: max_iter
119 integer,
public :: iter
120 logical,
public :: recalculate_gs
122 type(pes_t),
public :: pesv
124 integer,
public :: dynamics
125 integer,
public :: energy_update_iter
126 real(real64) :: scissor
128 logical :: freeze_occ
130 integer :: freeze_orbitals
132 logical :: from_scratch = .false.
134 type(td_write_t),
public :: write_handler
135 type(restart_t) :: restart_load
136 type(restart_t) :: restart_dump
153 subroutine td_init(td, namespace, space, gr, ions, st, ks, hm, ext_partners, outp)
154 type(td_t),
intent(inout) :: td
155 type(namespace_t),
intent(in) :: namespace
156 class(space_t),
intent(in) :: space
157 type(grid_t),
intent(in) :: gr
158 type(ions_t),
intent(inout) :: ions
159 type(states_elec_t),
intent(in) :: st
160 type(v_ks_t),
intent(in) :: ks
161 type(hamiltonian_elec_t),
intent(in) :: hm
162 type(partner_list_t),
intent(in) :: ext_partners
163 type(output_t),
intent(in) :: outp
166 real(real64) :: propagation_time
167 type(lasers_t),
pointer :: lasers
168 logical :: symmetrize
174 symmetrize = hm%kpoints%use_symmetries .or. st%symmetrize_density
177 if (td%ions_dyn%ions_move())
then
178 if (hm%kpoints%use_symmetries)
then
179 message(1) =
"KPoints symmetries cannot be used with moving ions."
180 message(2) =
"Please set KPointsSymmetries = no."
183 if (st%symmetrize_density)
then
184 message(1) =
"Symmetrization of the density cannot be used with moving ions."
185 message(2) =
"Please set SymmetrizeDensity = no."
207 write(
message(1),
'(a)')
'A positive value for TDTimeStep must be defined in the input file.'
215 call messages_write(
'You cannot set TDMaxSteps and TDPropagationTime at the same time')
244 if (propagation_time >
m_zero) default = nint(propagation_time/td%dt)
245 call parse_variable(namespace,
'TDMaxSteps', default, td%max_iter)
247 if (propagation_time <=
m_zero) propagation_time = td%dt*td%max_iter
252 if (td%max_iter < 1)
then
253 write(
message(1),
'(a,i6,a)')
"Input: '", td%max_iter,
"' is not a valid value for TDMaxSteps."
254 message(2) =
'(TDMaxSteps <= 1)'
263 call pes_init(td%pesv, namespace, space, gr, gr%box, st, outp%restart_write_interval, hm%kpoints, &
264 hm%abs_boundaries, ext_partners, td%max_iter, td%dt)
279 call parse_variable(namespace,
'TDDynamics', ehrenfest, td%dynamics)
282 if (td%dynamics .ne. ehrenfest)
then
283 if (.not. td%ions_dyn%is_active())
then
284 message(1) =
"TDDynamics=bo can only be used if MoveIons=yes or CellDynamics=yes"
305 call parse_variable(namespace,
'RecalculateGSDuringEvolution', .false., td%recalculate_gs)
306 if (hm%lda_u_level /=
dft_u_none .and. td%recalculate_gs)
then
328 call laser_write_info(lasers%lasers, dt=td%dt, max_iter=td%max_iter, namespace=namespace)
344 call parse_variable(namespace,
'TDEnergyUpdateIter', default, td%energy_update_iter)
345 if (td%energy_update_iter < 1)
then
349 if (gr%der%boundaries%spiralBC .and. hm%ep%reltype ==
spin_orbit)
then
350 message(1) =
"Generalized Bloch theorem cannot be used with spin-orbit coupling."
354 if (gr%der%boundaries%spiralBC)
then
355 if (any(abs(hm%kick%easy_axis(1:2)) >
m_epsilon))
then
356 message(1) =
"Generalized Bloch theorem cannot be used for an easy axis not along the z direction."
382 call parse_variable(namespace,
'TDFreezeOrbitals', 0, td%freeze_orbitals)
384 if (td%freeze_orbitals /= 0)
then
398 subroutine td_init_run(td, namespace, mc, gr, ions, st, ks, hm, ext_partners, outp, space, from_scratch)
399 type(
td_t),
intent(inout) :: td
402 type(
grid_t),
intent(inout) :: gr
403 type(
ions_t),
intent(inout) :: ions
405 type(
v_ks_t),
intent(inout) :: ks
408 type(
output_t),
intent(inout) :: outp
410 logical,
intent(inout) :: from_scratch
420 td%from_scratch = from_scratch
422 if (.not. td%from_scratch)
then
424 if (td%from_scratch)
then
425 message(1) =
"Unable to read time-dependent restart information: Starting from scratch"
430 if (td%iter >= td%max_iter)
then
431 message(1) =
"All requested iterations have already been done. Use FromScratch = yes if you want to redo them."
434 td%iter = td%iter + 1
435 if ((td%ions_dyn%is_active()) .and. td%recalculate_gs)
call restart_end(td%restart_load)
440 if (td%from_scratch)
then
444 call td_init_with_wavefunctions(td, namespace, space, mc, gr, ions, ext_partners, st, ks, hm, outp, td%from_scratch)
451 type(
td_t),
intent(inout) :: td
454 type(
grid_t),
intent(inout) :: gr
455 type(
ions_t),
intent(inout) :: ions
458 class(
space_t),
intent(in) :: space
463 if (td%dynamics == ehrenfest)
then
469 call lda_u_init(hm%lda_u, namespace, space, hm%lda_u_level, gr, ions, st, mc, &
470 hm%kpoints, hm%phase%is_allocated())
477 call scf_init(td%scf, namespace, gr, ions, st, mc, hm, space)
485 type(
td_t),
intent(inout) :: td
487 type(
grid_t),
intent(inout) :: gr
489 type(
v_ks_t),
intent(inout) :: ks
492 class(
space_t),
intent(in) :: space
499 if(
associated(gfield))
then
506 call hm%update(gr, namespace, space, ext_partners, time = td%dt*td%iter)
516 type(
td_t),
intent(inout) :: td
524 if (td%dynamics ==
bo)
call scf_end(td%scf)
531 type(
td_t),
intent(inout) :: td
537 if (st%pack_states .and. hm%apply_packed())
call st%unpack()
544 if ((td%ions_dyn%is_active()).and. td%recalculate_gs)
call restart_end(td%restart_load)
550 subroutine td_run(td, namespace, mc, gr, ions, st, ks, hm, ext_partners, outp, space, from_scratch)
551 type(
td_t),
intent(inout) :: td
554 type(
grid_t),
intent(inout) :: gr
555 type(
ions_t),
intent(inout) :: ions
557 type(
v_ks_t),
intent(inout) :: ks
560 type(
output_t),
intent(inout) :: outp
562 logical,
intent(inout) :: from_scratch
565 integer :: iter, scsteps
566 real(real64) :: etime
574 propagation:
do iter = td%iter, td%max_iter
581 if (((iter-1)*td%dt <= hm%kick%time) .and. (iter*td%dt > hm%kick%time))
then
582 if (.not. hm%pcm%localf)
then
583 call kick_apply(space, gr, st, td%ions_dyn, ions, hm%kick, hm%psolver, hm%kpoints)
585 call kick_apply(space, gr, st, td%ions_dyn, ions, hm%kick, hm%psolver, hm%kpoints, pcm = hm%pcm)
587 call td_write_kick(outp, namespace, space, gr, hm%kick, ions, iter)
590 if (gr%der%boundaries%spiralBC) gr%der%boundaries%spiral = .
true.
595 select case (td%dynamics)
597 call propagator_elec_dt(ks, namespace, space, hm, gr, st, td%tr, iter*td%dt, td%dt, iter, td%ions_dyn, &
598 ions, ext_partners, mc, outp, td%write_handler, scsteps = scsteps, &
599 update_energy = (mod(iter, td%energy_update_iter) == 0) .or. (iter == td%max_iter))
601 call propagator_elec_dt_bo(td%scf, namespace, space, gr, ks, st, hm, ions, ext_partners, mc, outp, iter, &
602 td%dt, td%ions_dyn, scsteps)
615 if (td%pesv%calc_spm .or. td%pesv%calc_mask .or. td%pesv%calc_flux)
then
616 call pes_calc(td%pesv, namespace, space, gr, st, td%dt, iter, gr%der, hm%kpoints, ext_partners, stopping)
619 call td_write_iter(td%write_handler, namespace, space, outp, gr, st, hm, ions, ext_partners, &
620 hm%kick, ks, td%dt, iter, mc, td%recalculate_gs)
623 call td_check_point(td, namespace, mc, gr, ions, st, ks, hm, ext_partners, outp, space, &
624 iter, scsteps, etime, stopping, from_scratch)
642 write(
message(1),
'(a7,1x,a14,a14,a10,a17)')
'Iter ',
'Time ',
'Energy ',
'SC Steps',
'Elapsed Time '
651 subroutine td_check_point(td, namespace, mc, gr, ions, st, ks, hm, ext_partners, outp, space, &
652 iter, scsteps, etime, stopping, from_scratch)
653 type(
td_t),
intent(inout) :: td
656 type(
grid_t),
intent(inout) :: gr
657 type(
ions_t),
intent(inout) :: ions
659 type(
v_ks_t),
intent(inout) :: ks
664 integer,
intent(in) :: iter
665 integer,
intent(in) :: scsteps
666 real(real64),
intent(inout) :: etime
667 logical,
intent(in) :: stopping
668 logical,
intent(inout) :: from_scratch
676 if (outp%anything_now(iter))
then
677 call td_write_output(namespace, space, gr, st, hm, ks, outp, ions, ext_partners, iter, td%dt)
680 if (mod(iter, outp%restart_write_interval) == 0 .or. iter == td%max_iter .or. stopping)
then
683 call td_dump(td, namespace, space, gr, st, hm, ks, ext_partners, iter, ierr)
685 message(1) =
"Unable to write time-dependent restart information."
689 call pes_output(td%pesv, namespace, space, gr, st, iter, outp, td%dt, ions)
691 if ((td%ions_dyn%is_active()) .and. td%recalculate_gs)
then
693 from_scratch = .false.
695 call electrons_ground_state_run(namespace, mc, gr, ions, ext_partners, st, ks, hm, outp, space, from_scratch)
697 call td_load(td%restart_load, namespace, space, gr, st, hm, ext_partners, td, ks, ierr)
699 message(1) =
"Unable to load TD states."
703 call v_ks_calc(ks, namespace, space, hm, st, ions, ext_partners, &
704 calc_eigenval=.
true., time = iter*td%dt, calc_energy=.
true.)
705 call forces_calculate(gr, namespace, ions, hm, ext_partners, st, ks, t = iter*td%dt, dt = td%dt)
706 assert(.not. td%ions_dyn%cell_relax())
717 type(
td_t),
intent(inout) :: td
719 type(
ions_t),
intent(inout) :: ions
721 integer,
intent(in) :: iter
722 integer,
intent(in) :: scsteps
723 real(real64),
intent(inout) :: etime
738 real(real64),
intent(inout) :: etime
748 subroutine td_init_with_wavefunctions(td, namespace, space, mc, gr, ions, ext_partners, st, ks, hm, outp, from_scratch)
749 type(
td_t),
intent(inout) :: td
753 type(
grid_t),
intent(inout) :: gr
754 type(
ions_t),
intent(inout) :: ions
757 type(
v_ks_t),
intent(inout) :: ks
759 type(
output_t),
intent(inout) :: outp
760 logical,
intent(in) :: from_scratch
764 real(real64) :: ndinitial(space%dim)
765 logical :: freeze_hxc, freeze_occ, freeze_u
766 type(
restart_t) :: restart, restart_frozen
773 if (gr%der%boundaries%spiralBC)
then
774 if ((td%iter-1)*td%dt > hm%kick%time)
then
775 gr%der%boundaries%spiral = .
true.
777 hm%vnl%spin => st%spin
778 hm%phase%spin => st%spin
783 if (from_scratch)
then
790 if (td%freeze_orbitals > 0)
then
791 if (from_scratch)
then
802 message(1) =
"Unable to read frozen restart information."
807 write(
message(1),
'(a,i4,a,i4,a)')
'Info: The lowest', td%freeze_orbitals, &
808 ' orbitals have been frozen.', st%nst,
' will be propagated.'
812 call v_ks_calc(ks, namespace, space, hm, st, ions, ext_partners, calc_eigenval=.
true., time = td%iter*td%dt)
813 else if (td%freeze_orbitals < 0)
then
816 write(
message(1),
'(a)')
'Info: The single-active-electron approximation will be used.'
818 call v_ks_calc(ks, namespace, space, hm, st, ions, ext_partners, calc_eigenval=.
true., time = td%iter*td%dt)
819 if (from_scratch)
then
830 call v_ks_calc(ks, namespace, space, hm, st, ions, ext_partners, calc_eigenval=.
true., time = td%iter*td%dt)
843 write(
message(1),
'(a)')
'Info: Freezing Hartree and exchange-correlation potentials.'
846 if (.not. from_scratch)
then
849 call states_elec_load(restart_frozen, namespace, space, st, gr, hm%kpoints, fixed_occ=.
true., ierr=ierr, label =
": gs")
854 call v_ks_calc(ks, namespace, space, hm, st, ions, ext_partners, calc_eigenval=.
true., time = td%iter*td%dt)
857 call states_elec_load(restart_frozen, namespace, space, st, gr, hm%kpoints, st%restart_fixed_occ, ierr, iter=td%iter, label =
": td")
859 call hm%ks_pot%run_zero_iter(td%tr%vks_old)
867 x = minval(st%eigenval(st%st_start, :))
868 if (st%parallel_in_states)
then
869 call st%mpi_grp%bcast(x, 1, mpi_double_precision, 0)
871 call hm%update_span(gr%spacing(1:space%dim), x, namespace)
873 call states_elec_fermi(st, namespace, gr, compute_spin = .not. gr%der%boundaries%spiralBC)
884 call parse_variable(namespace,
'TDFreezeDFTUOccupations', .false., freeze_occ)
886 write(
message(1),
'(a)')
'Info: Freezing DFT+U occupation matrices that enters in the DFT+U potential.'
891 if (hm%lda_u_level /=
dft_u_none .and. .not. from_scratch)
then
893 call lda_u_load(restart_frozen, hm%lda_u, st, hm%energy%dft_u, ierr, occ_only = .
true.)
907 write(
message(1),
'(a)')
'Info: Freezing the effective U of DFT+U.'
912 if (hm%lda_u_level ==
dft_u_acbn0 .and. .not. from_scratch)
then
914 call lda_u_load(restart_frozen, hm%lda_u, st, hm%energy%dft_u, ierr, u_only = .
true.)
916 write(
message(1),
'(a)')
'Loaded GS effective U of DFT+U'
925 call td_write_init(td%write_handler, namespace, space, outp, gr, st, hm, ions, ext_partners, &
926 ks, td%ions_dyn%is_active(), &
931 if(
associated(lasers))
then
933 ndinitial(1:space%dim)=
m_zero
942 call scissor_init(hm%scissor, namespace, space, st, gr, hm%d, hm%kpoints, hm%phase, td%scissor, mc)
945 if (td%iter == 0)
call td_run_zero_iter(td, namespace, space, gr, ions, st, ks, hm, ext_partners, outp, mc)
948 if(
associated(gfield))
then
950 if(ks%xc%kernel_lrc_alpha >
m_epsilon)
then
960 td%iter = td%iter + 1
963 if (td%ions_dyn%is_active() .and. td%recalculate_gs)
then
971 if ((td%pesv%calc_spm .or. td%pesv%calc_mask) .and. from_scratch)
then
975 if (st%pack_states .and. hm%apply_packed())
call st%pack()
982 type(
td_t),
intent(inout) :: td
985 type(
grid_t),
intent(inout) :: gr
986 type(
ions_t),
intent(inout) :: ions
989 type(
v_ks_t),
intent(inout) :: ks
991 type(
output_t),
intent(inout) :: outp
996 if (td%ions_dyn%ions_move())
then
997 if (td%iter > 0)
then
1004 call v_ks_calc(ks, namespace, space, hm, st, ions, ext_partners, calc_eigenval=.
true., time = td%iter*td%dt)
1007 call forces_calculate(gr, namespace, ions, hm, ext_partners, st, ks, t = td%iter*td%dt, dt = td%dt)
1009 call ions%update_kinetic_energy()
1011 if (outp%what(option__output__forces) .or. td%write_handler%out(
out_separate_forces)%write)
then
1012 call forces_calculate(gr, namespace, ions, hm, ext_partners, st, ks, t = td%iter*td%dt, dt = td%dt)
1016 if (outp%what(option__output__stress) .or. td%ions_dyn%cell_relax())
then
1018 if (td%ions_dyn%cell_relax())
then
1019 call td%ions_dyn%update_stress(ions%space, st%stress_tensors%total, ions%latt%rlattice, ions%latt%rcell_volume)
1028 type(
td_t),
intent(inout) :: td
1030 class(
space_t),
intent(in) :: space
1032 type(
grid_t),
intent(inout) :: gr
1035 type(
v_ks_t),
intent(inout) :: ks
1037 logical,
intent(inout) :: from_scratch
1045 if (td%freeze_orbitals > 0)
then
1051 call td_load(restart, namespace, space, gr, st, hm, ext_partners, td, ks, ierr)
1055 from_scratch = .
true.
1064 type(
td_t),
intent(inout) :: td
1066 class(
space_t),
intent(in) :: space
1068 type(
grid_t),
intent(inout) :: gr
1071 type(
v_ks_t),
intent(inout) :: ks
1081 if (.not. st%only_userdef_istates)
then
1084 st%restart_fixed_occ, ierr, label =
": gs")
1087 message(1) =
'Unable to read ground-state wavefunctions.'
1106 subroutine td_run_zero_iter(td, namespace, space, gr, ions, st, ks, hm, ext_partners, outp, mc)
1107 type(
td_t),
intent(inout) :: td
1110 type(
grid_t),
intent(inout) :: gr
1111 type(
ions_t),
intent(inout) :: ions
1113 type(
v_ks_t),
intent(inout) :: ks
1121 call td_write_iter(td%write_handler, namespace, space, outp, gr, st, hm, ions, ext_partners, &
1122 hm%kick, ks, td%dt, 0, mc, td%recalculate_gs)
1126 if (abs(hm%kick%time) <=
m_epsilon)
then
1127 if (.not. hm%pcm%localf)
then
1128 call kick_apply(space, gr, st, td%ions_dyn, ions, hm%kick, hm%psolver, hm%kpoints)
1130 call kick_apply(space, gr, st, td%ions_dyn, ions, hm%kick, hm%psolver, hm%kpoints, pcm = hm%pcm)
1132 call td_write_kick(outp, namespace, space, gr, hm%kick, ions, 0)
1135 if (gr%der%boundaries%spiralBC)
then
1136 gr%der%boundaries%spiral = .
true.
1139 call hm%ks_pot%run_zero_iter(td%tr%vks_old)
1141 if (any(outp%output_interval > 0))
then
1143 call td_write_output(namespace, space, gr, st, hm, ks, outp, ions, ext_partners, 0)
1153 type(
td_t),
intent(in) :: td
1155 type(
ions_t),
intent(inout) :: ions
1157 integer :: iatom, iter, iunit
1161 iunit =
io_open(
'td.general/coordinates', namespace, action=
'read', status=
'old', die=.false.)
1162 if (iunit == -1)
then
1163 message(1) =
"Could not open file '"//trim(
io_workpath(
'td.general/coordinates', namespace))//
"'."
1164 message(2) =
"Starting simulation from initial geometry."
1171 do iter = 0, td%iter - 1
1174 read(iunit,
'(32x)', advance=
'no')
1176 do iatom = 1, ions%natoms
1177 read(iunit,
'(3es24.16)', advance=
'no') ions%pos(:, iatom)
1180 do iatom = 1, ions%natoms
1181 read(iunit,
'(3es24.16)', advance=
'no') ions%vel(:, iatom)
1184 do iatom = 1, ions%natoms
1185 read(iunit,
'(3es24.16)', advance=
'no') ions%tot_force(:, iatom)
1195 subroutine td_dump(td, namespace, space, gr, st, hm, ks, ext_partners, iter, ierr)
1196 type(
td_t),
intent(in) :: td
1198 class(
space_t),
intent(in) :: space
1202 type(
v_ks_t),
intent(in) :: ks
1204 integer,
intent(in) :: iter
1205 integer,
intent(out) :: ierr
1208 integer :: err, err2
1219 message(1) =
"Debug: Writing td restart."
1223 call states_elec_dump(td%restart_dump, space, st, gr, hm%kpoints, err, iter=iter)
1224 if (err /= 0) ierr = ierr + 1
1227 if (err /= 0) ierr = ierr + 1
1230 call lda_u_dump(td%restart_dump, namespace, hm%lda_u, st, gr, err)
1231 if (err /= 0) ierr = ierr + 1
1235 if (err2 /= 0) ierr = ierr + 2
1237 call pes_dump(td%pesv, namespace, td%restart_dump, st, gr, err)
1238 if (err /= 0) ierr = ierr + 4
1242 if(
associated(gfield))
then
1244 if (err /= 0) ierr = ierr + 8
1247 if (gr%der%boundaries%spiralBC)
then
1249 if (err /= 0) ierr = ierr + 8
1252 if (ks%has_photons)
then
1253 call mf_photons_dump(td%restart_dump, ks%pt_mx, gr, td%dt, ks%pt, err)
1254 if (err /= 0) ierr = ierr + 16
1257 if (ks%xc_photon /= 0)
then
1259 call ks%xc_photons%mf_dump(td%restart_dump, err)
1260 if (err /= 0) ierr = ierr + 32
1263 if (
allocated(st%frozen_rho))
then
1266 if (err /= 0) ierr = ierr + 64
1268 if (td%ions_dyn%ions_move() .or. td%ions_dyn%cell_relax())
then
1271 if (err /= 0) ierr = ierr + 128
1273 message(1) =
"Debug: Writing td restart done."
1280 subroutine td_load(restart, namespace, space, gr, st, hm, ext_partners, td, ks, ierr)
1283 class(
space_t),
intent(in) :: space
1284 type(
grid_t),
intent(in) :: gr
1289 type(
v_ks_t),
intent(inout) :: ks
1290 integer,
intent(out) :: ierr
1292 integer :: err, err2
1304 message(1) =
"Debug: Reading td restart."
1308 call states_elec_load(restart, namespace, space, st, gr, hm%kpoints, st%restart_fixed_occ, &
1309 err, iter=td%iter, label =
": td")
1316 if (err2 /= 0) ierr = ierr + 2
1319 call lda_u_load(restart, hm%lda_u, st, hm%energy%dft_u, err)
1320 if (err /= 0) ierr = ierr + 1
1325 if (td%pesv%calc_spm .or. td%pesv%calc_mask .or. td%pesv%calc_flux)
then
1326 call pes_load(td%pesv, namespace, restart, st, err)
1327 if (err /= 0) ierr = ierr + 4
1332 if (
associated(gfield))
then
1337 call hm%update(gr, namespace, space, ext_partners, time = td%dt*td%iter)
1342 if (ks%has_photons)
then
1344 if (err /= 0) ierr = ierr + 16
1347 if (ks%xc_photon /= 0)
then
1348 call ks%xc_photons%mf_load(restart, space, err)
1349 if (err /= 0) ierr = ierr + 32
1352 if (gr%der%boundaries%spiralBC)
then
1359 if (td%ions_dyn%is_active())
then
1361 if (err /= 0) ierr = ierr + 64
1364 message(1) =
"Debug: Reading td restart done."
1371 subroutine td_load_frozen(namespace, restart, space, mesh, st, hm, ierr)
1374 class(
space_t),
intent(in) :: space
1375 class(
mesh_t),
intent(in) :: mesh
1378 integer,
intent(out) :: ierr
1390 message(1) =
"Debug: Reading td frozen restart."
1393 safe_allocate(st%frozen_rho(1:mesh%np, 1:st%d%nspin))
1395 safe_allocate(st%frozen_tau(1:mesh%np, 1:st%d%nspin))
1396 safe_allocate(st%frozen_gdens(1:mesh%np, 1:space%dim, 1:st%d%nspin))
1397 safe_allocate(st%frozen_ldens(1:mesh%np, 1:st%d%nspin))
1402 message(1) =
"Debug: Reading td frozen restart done."
1410 type(
td_t),
intent(in) :: td
1421 type(
td_t),
intent(inout) :: td
1422 logical,
intent(in) :: from_scratch
1426 td%from_scratch = from_scratch
Prints out to iunit a message in the form: ["InputVariable" = value] where "InputVariable" is given b...
integer, parameter, public mask_absorbing
Module implementing boundary conditions in Octopus.
This module handles the calculation mode.
type(calc_mode_par_t), public calc_mode_par
Singleton instance of parallel calculation mode.
integer, parameter, public p_strategy_states
parallelization in states
This module implements a calculator for the density and defines related functions.
subroutine, public states_elec_freeze_adjust_qtot(st)
subroutine, public states_elec_freeze_redistribute_states(st, namespace, mesh, mc, nn)
subroutine, public states_elec_freeze_orbitals(st, namespace, space, gr, mc, kpoints, n, family_is_mgga)
Calculate partial density for frozen orbitals.
subroutine, public density_calc(st, gr, density, istin)
Computes the density from the orbitals in st.
subroutine, public electrons_ground_state_run(namespace, mc, gr, ions, ext_partners, st, ks, hm, outp, space, fromScratch)
subroutine, public energy_calc_total(namespace, space, hm, gr, st, ext_partners, iunit, full)
This subroutine calculates the total energy of the system. Basically, it adds up the KS eigenvalues,...
integer, parameter, public spin_orbit
logical function, public list_has_gauge_field(partners)
type(gauge_field_t) function, pointer, public list_get_gauge_field(partners)
type(lasers_t) function, pointer, public list_get_lasers(partners)
subroutine, public forces_calculate(gr, namespace, ions, hm, ext_partners, st, ks, vhxc_old, t, dt)
subroutine, public gauge_field_load(restart, gfield, ierr)
subroutine, public gauge_field_get_force(this, gr, spin_channels, current, lrc_alpha)
subroutine, public gauge_field_dump(restart, gfield, ierr)
logical pure function, public gauge_field_is_propagated(this)
logical pure function, public gauge_field_is_used(this)
subroutine, public gauge_field_init_vec_pot(this, qtot)
real(real64), parameter, public m_zero
real(real64), parameter, public m_epsilon
real(real64), parameter, public m_one
This module implements the underlying real-space grid.
subroutine, public zvmask(mesh, hm, st)
subroutine, public hamiltonian_elec_epot_generate(this, namespace, space, gr, ions, ext_partners, st, time)
subroutine, public dvmask(mesh, hm, st)
This module defines classes and functions for interaction partners.
subroutine, public io_close(iunit, grp)
subroutine, public io_skip_header(iunit)
character(len=max_path_len) function, public io_workpath(path, namespace)
subroutine, public io_debug_on_the_fly(namespace)
check if debug mode should be enabled or disabled on the fly
integer function, public io_open(file, namespace, action, status, form, position, die, recl, grp)
subroutine, public ion_dynamics_dump(this, restart, ierr)
subroutine, public ion_dynamics_propagate(this, ions, time, dt, namespace)
Interface for the ion/cell dynamics.
subroutine, public ion_dynamics_load(this, restart, ierr)
subroutine, public ion_dynamics_init(this, namespace, ions, symmetrize, symm)
subroutine, public ion_dynamics_end(this)
logical pure function, public ion_dynamics_drive_ions(this)
Is the ion dynamics activated or not.
subroutine, public kick_apply(space, mesh, st, ions_dyn, ions, kick, psolver, kpoints, pcm)
Applies the delta-function electric field where k = kick%delta_strength.
subroutine, public lasers_set_nondipole_parameters(this, ndfield, nd_integration_time)
Set parameters for nondipole SFA calculation.
logical function, public lasers_with_nondipole_field(lasers)
Check if a nondipole SFA correction should be computed for the given laser.
subroutine, public laser_write_info(lasers, namespace, dt, max_iter, iunit)
subroutine, public lda_u_dump(restart, namespace, this, st, mesh, ierr)
subroutine, public lda_u_write_u(this, iunit, namespace)
subroutine, public lda_u_load(restart, this, st, dftu_energy, ierr, occ_only, u_only)
subroutine, public lda_u_write_v(this, iunit, namespace)
integer, parameter, public dft_u_none
subroutine, public lda_u_freeze_occ(this)
subroutine, public lda_u_freeze_u(this)
subroutine, public lda_u_end(this)
subroutine, public lda_u_init(this, namespace, space, level, gr, ions, st, mc, kpoints, has_phase)
integer, parameter, public dft_u_acbn0
subroutine, public lda_u_update_occ_matrices(this, namespace, mesh, st, hm_base, phase, energy)
This module implements fully polymorphic linked lists, and some specializations thereof.
This module defines the meshes, which are used in Octopus.
subroutine, public messages_print_with_emphasis(msg, iunit, namespace)
subroutine, public messages_not_implemented(feature, namespace)
character(len=512), private msg
subroutine, public messages_warning(no_lines, all_nodes, namespace)
subroutine, public messages_obsolete_variable(namespace, name, rep)
character(len=256), dimension(max_lines), public message
to be output by fatal, warning
subroutine, public messages_fatal(no_lines, only_root_writes, namespace)
subroutine, public messages_input_error(namespace, var, details, row, column)
subroutine, public messages_experimental(name, namespace)
subroutine, public messages_info(no_lines, iunit, debug_only, stress, all_nodes, namespace)
logical function mpi_grp_is_root(grp)
Is the current MPI process of grpcomm, root.
type(mpi_grp_t), public mpi_world
This module handles the communicators for the various parallelization strategies.
this module contains the low-level part of the output system
this module contains the output system
logical function, public parse_is_defined(namespace, name)
subroutine, public pes_calc(pes, namespace, space, mesh, st, dt, iter, der, kpoints, ext_partners, stopping)
subroutine, public pes_init(pes, namespace, space, mesh, box, st, save_iter, kpoints, abs_boundaries, ext_partners, max_iter, dt)
subroutine, public pes_output(pes, namespace, space, gr, st, iter, outp, dt, ions)
subroutine, public pes_init_write(pes, mesh, st, namespace)
subroutine, public pes_end(pes)
subroutine, public pes_load(pes, namespace, restart, st, ierr)
subroutine, public pes_dump(pes, namespace, restart, st, mesh, ierr)
subroutine, public mf_photons_load(restart, this, gr, ierr)
subroutine, public mf_photons_dump(restart, this, gr, dt, pt_mode, ierr)
subroutine, public potential_interpolation_load(potential_interpolation, namespace, space, restart, mesh, nspin, err2)
subroutine, public potential_interpolation_dump(potential_interpolation, space, restart, mesh, nspin, err2)
subroutine, public profiling_out(label)
Increment out counter and sum up difference between entry and exit time.
subroutine, public profiling_in(label, exclude)
Increment in counter and save entry time.
subroutine, public propagator_elec_dt_bo(scf, namespace, space, gr, ks, st, hm, ions, ext_partners, mc, outp, iter, dt, ions_dyn, scsteps)
subroutine, public propagator_elec_init(gr, namespace, st, tr, ks_pot, have_fields, family_is_mgga_with_exc, relax_cell)
subroutine, public propagator_elec_dt(ks, namespace, space, hm, gr, st, tr, time, dt, nt, ions_dyn, ions, ext_partners, mc, outp, write_handler, scsteps, update_energy, qcchi)
Propagates st from time - dt to t. If dt<0, it propagates backwards from t+|dt| to t.
subroutine, public propagator_elec_end(tr)
This module implements the basic propagator framework.
logical function, public clean_stop(comm)
returns true if a file named stop exists
integer, parameter, public restart_gs
subroutine, public restart_init(restart, namespace, data_type, type, mc, ierr, mesh, dir, exact)
Initializes a restart object.
integer, parameter, public restart_type_dump
logical pure function, public restart_skip(restart)
Returns true if the restart information should neither be read nor written. This might happen because...
integer, parameter, public restart_td
integer, parameter, public restart_type_load
subroutine, public restart_end(restart)
subroutine, public scf_init(scf, namespace, gr, ions, st, mc, hm, space)
subroutine, public scf_end(scf)
subroutine, public scissor_init(this, namespace, space, st, mesh, d, kpoints, phase, gap, mc)
pure logical function, public states_are_real(st)
subroutine, public states_elec_fermi(st, namespace, mesh, compute_spin)
calculate the Fermi level for the states in this object
subroutine, public states_elec_deallocate_wfns(st)
Deallocates the KS wavefunctions defined within a states_elec_t structure.
subroutine, public states_elec_allocate_wfns(st, mesh, wfs_type, skip, packed)
Allocates the KS wavefunctions defined within a states_elec_t structure.
This module handles reading and writing restart information for the states_elec_t.
subroutine, public states_elec_read_user_def_orbitals(mesh, namespace, space, st)
the routine reads formulas for user-defined wavefunctions from the input file and fills the respectiv...
subroutine, public states_elec_load_frozen(restart, space, st, mesh, ierr)
subroutine, public states_elec_dump(restart, space, st, mesh, kpoints, ierr, iter, lr, st_start_writing, verbose)
subroutine, public states_elec_transform(st, namespace, space, restart, mesh, kpoints, prefix)
subroutine, public states_elec_load(restart, namespace, space, st, mesh, kpoints, fixed_occ, ierr, iter, lr, lowest_missing, label, verbose, skip)
returns in ierr: <0 => Fatal error, or nothing read =0 => read all wavefunctions >0 => could only rea...
subroutine, public states_elec_load_spin(restart, st, ierr)
returns in ierr: <0 => Fatal error, or nothing read =0 => read all wavefunctions >0 => could only rea...
subroutine, public states_elec_dump_frozen(restart, space, st, mesh, ierr)
subroutine, public states_elec_dump_rho(restart, space, st, mesh, ierr, iter)
subroutine, public states_elec_dump_spin(restart, st, ierr)
This module implements the calculation of the stress tensor.
subroutine, public stress_calculate(namespace, gr, hm, st, ions, ks, ext_partners)
This computes the total stress on the lattice.
subroutine, public td_check_point(td, namespace, mc, gr, ions, st, ks, hm, ext_partners, outp, space, iter, scsteps, etime, stopping, from_scratch)
subroutine, public td_end(td)
subroutine, public td_load_restart_from_gs(td, namespace, space, mc, gr, ext_partners, st, ks, hm)
subroutine td_print_message(td, namespace, ions, hm, iter, scsteps, etime)
subroutine, public td_run_init()
subroutine, public td_end_run(td, st, hm)
subroutine, public td_init(td, namespace, space, gr, ions, st, ks, hm, ext_partners, outp)
subroutine, public td_allocate_wavefunctions(td, namespace, mc, gr, ions, st, hm, space)
logical function, public td_get_from_scratch(td)
subroutine td_load_frozen(namespace, restart, space, mesh, st, hm, ierr)
subroutine td_print_header(namespace)
integer, parameter, public bo
subroutine td_load(restart, namespace, space, gr, st, hm, ext_partners, td, ks, ierr)
subroutine, public td_set_from_scratch(td, from_scratch)
subroutine, public td_dump(td, namespace, space, gr, st, hm, ks, ext_partners, iter, ierr)
subroutine td_read_coordinates(td, namespace, ions)
reads the pos and vel from coordinates file
subroutine, public td_run(td, namespace, mc, gr, ions, st, ks, hm, ext_partners, outp, space, from_scratch)
subroutine td_run_zero_iter(td, namespace, space, gr, ions, st, ks, hm, ext_partners, outp, mc)
subroutine, public td_init_gaugefield(td, namespace, gr, st, ks, hm, ext_partners, space)
subroutine td_update_elapsed_time(etime)
subroutine, public td_init_with_wavefunctions(td, namespace, space, mc, gr, ions, ext_partners, st, ks, hm, outp, from_scratch)
subroutine, public td_load_restart_from_td(td, namespace, space, mc, gr, ext_partners, st, ks, hm, from_scratch)
subroutine td_init_ions_and_forces(td, namespace, space, gr, ions, ext_partners, st, ks, hm, outp)
subroutine, public td_init_run(td, namespace, mc, gr, ions, st, ks, hm, ext_partners, outp, space, from_scratch)
subroutine, public td_write_output(namespace, space, gr, st, hm, ks, outp, ions, ext_partners, iter, dt)
subroutine, public td_write_data(writ)
subroutine, public td_write_kick(outp, namespace, space, mesh, kick, ions, iter)
subroutine, public td_write_end(writ)
subroutine, public td_write_iter(writ, namespace, space, outp, gr, st, hm, ions, ext_partners, kick, ks, dt, iter, mc, recalculate_gs)
subroutine, public td_write_init(writ, namespace, space, outp, gr, st, hm, ions, ext_partners, ks, ions_move, with_gauge_field, kick, iter, max_iter, dt, mc)
Initialize files to write when prograting in time.
integer, parameter, public out_separate_forces
type(type_t), parameter, public type_cmplx
brief This module defines the class unit_t which is used by the unit_systems_oct_m module.
This module defines the unit system, used for input and output.
type(unit_system_t), public units_out
type(unit_system_t), public units_inp
the units systems for reading and writing
subroutine, public v_ks_freeze_hxc(ks)
subroutine, public v_ks_calculate_current(this, calc_cur)
subroutine, public v_ks_calc(ks, namespace, space, hm, st, ions, ext_partners, calc_eigenval, time, calc_energy, calc_current, force_semilocal)
This module provices a simple timer class which can be used to trigger the writing of a restart file ...
logical function, public walltimer_alarm(comm, print)
indicate whether time is up
pure logical function, public family_is_mgga(family, only_collinear)
Is the xc function part of the mGGA family.
logical pure function, public family_is_mgga_with_exc(xcs)
Is the xc function part of the mGGA family with an energy functional.
Extension of space that contains the knowledge of the spin dimension.
Description of the grid, containing information on derivatives, stencil, and symmetries.
Describes mesh distribution to nodes.
Stores all communicators and groups.
The states_elec_t class contains all electronic wave functions.