Octopus
stress.F90
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1!! Copyright (C) 2002-2016 M. Marques, A. Castro, A. Rubio, G. Bertsch
2!! Copyright (C) 2023 N. Tancogne-Dejean
3!!
4!! This program is free software; you can redistribute it and/or modify
5!! it under the terms of the GNU General Public License as published by
6!! the Free Software Foundation; either version 2, or (at your option)
7!! any later version.
8!!
9!! This program is distributed in the hope that it will be useful,
10!! but WITHOUT ANY WARRANTY; without even the implied warranty of
11!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12!! GNU General Public License for more details.
13!!
14!! You should have received a copy of the GNU General Public License
15!! along with this program; if not, write to the Free Software
16!! Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
17!! 02110-1301, USA.
18!!
19
20#include "global.h"
21
22! ---------------------------------------------------------
25module stress_oct_m
28 use comm_oct_m
29 use debug_oct_m
33 use energy_oct_m
35 use epot_oct_m
36 use global_oct_m
37 use grid_oct_m
39 use io_oct_m
41 use ions_oct_m
43 use, intrinsic :: iso_fortran_env
47 use lda_u_oct_m
50 use math_oct_m
51 use mesh_oct_m
55 use mpi_oct_m
60 use ps_oct_m
62 use space_oct_m
72 use types_oct_m
73 use unit_oct_m
75 use v_ks_oct_m
77 use xc_oct_m
78 use xc_f03_lib_m
80 implicit none
81
82 private
83 public :: &
87
88contains
89
90 ! ---------------------------------------------------------
92 subroutine stress_calculate(namespace, gr, hm, st, ions, ks, ext_partners)
93 type(namespace_t), intent(in) :: namespace
94 type(grid_t), intent(inout) :: gr
95 type(hamiltonian_elec_t), intent(inout) :: hm
96 type(states_elec_t), target, intent(inout) :: st
97 type(ions_t), intent(inout) :: ions
98 type(v_ks_t), intent(in) :: ks
99 type(partner_list_t), intent(in) :: ext_partners
100
101 real(real64), allocatable :: rho_total(:)
102 real(real64) :: stress(3,3) ! stress tensor in Cartesian coordinate
103 real(real64) :: stress_kin(3,3), stress_Hartree(3,3), stress_xc(3,3), stress_xc_nlcc(3,3)
104 real(real64) :: stress_ps(3,3), stress_ps_nl(3,3), stress_ps_local(3,3), stress_ii(3,3)
105 real(real64) :: stress_hubbard(3,3)
106 integer :: ip
107 real(real64), allocatable :: vh(:)
108 real(real64), allocatable :: grad_vh(:,:)
109 real(real64) :: ehartree
110 real(real64), contiguous, pointer :: rho(:)
111
112 call profiling_in("STRESS_CALCULATE")
113 push_sub(stress_calculate)
114
115 if (st%wfs_type /= type_cmplx) then
116 write(message(1),'(a)') 'The stress tensors for real wavefunctions has not been implemented!'
117
118 if (hm%kpoints%full%npoints == 1) then
119 write(message(2),'(a)') 'For testing this feature, you can add ForceComplex=yes to the input file'
120 call messages_fatal(2, namespace=namespace)
121 end if
122
123 call messages_fatal(1, namespace=namespace)
124 end if
125
126 if (ions%space%periodic_dim == 1) then
127 call messages_not_implemented("Stress tensor for 1D periodic systems", namespace=namespace)
128 end if
129
130 if (.not. ions%space%is_periodic()) then
131 write(message(1),'(a)') 'The stress tensor cannot be computed for isolated systems'
132 call messages_fatal(1, namespace=namespace)
133 end if
134
135 if (ks%vdw%vdw_correction /= option__vdwcorrection__none .and. .not. any(ks%vdw%vdw_correction == d3_lib_options)) then
136 write(message(1),'(a)') 'The stress tensor is currently only implemented with DFT-D3 vdW correction'
137 call messages_fatal(1, namespace=namespace)
138 end if
139
140 if (hm%pcm%run_pcm) then
141 call messages_not_implemented('Stress tensor with PCM')
142 end if
143
144 if (allocated(hm%v_static)) then
145 call messages_not_implemented('Stress tensor with static electric fields')
146 end if
147
148 if (ks%has_photons) then
149 call messages_not_implemented('Stress tensor with photon modes')
150 end if
151
152 if (.not. hm%vnl%apply_projector_matrices) then
153 call messages_not_implemented('Stress tensor with relativistic Kleinman-Bylander pseudopotential')
154 end if
155
156 if (hm%ep%reltype == scalar_relativistic_zora .or. hm%ep%reltype == fully_relativistic_zora) then
157 call messages_not_implemented('Stress tensor with ZORA')
158 end if
159
160 ! Checks for the xc part of KS-DFT and GKS-DFT
161 if (ks%theory_level == kohn_sham_dft .or. ks%theory_level == generalized_kohn_sham_dft) then
162 if (.not. xc_is_energy_functional(hm%xc)) then
163 call messages_not_implemented("Stress tensor with xc functionals that are not energy functionals")
164 end if
165
166 if ( .not. in_family(hm%xc%family, [xc_family_lda, xc_family_gga])) then
167 write(message(1),'(a)') 'The stress tensor computation is currently only possible at the Kohn-Sham DFT level'
168 write(message(2),'(a)') 'with LDA and GGA functionals or for independent particles.'
169 call messages_fatal(2, namespace=namespace)
170 end if
171
172 if (in_family(hm%xc%family, [xc_family_gga]) .and. st%d%ispin == spinors) then
173 call messages_not_implemented("Stress tensor for GGAs with spinors", namespace=namespace)
174 end if
175 end if
176
177 if (hm%magnetic_constrain%level /= constrain_none) then
178 call messages_not_implemented("Stress tensor with MagneticConstrain /= constrain_none")
179 end if
180
181 stress(:,:) = m_zero
182
183 safe_allocate(rho_total(1:gr%np_part))
184 do ip = 1, gr%np
185 rho_total(ip) = sum(st%rho(ip, 1:st%d%nspin))
186 end do
187
188 ! As we rely on some of the full energy components, we need to recompute it first
189 ! TODO: We should restrict the components of the energy needed to be computed
190 call energy_calc_total(namespace, ions%space, hm, gr, st, ext_partners, iunit = -1, full = .true.)
191
192 ! In order to get the electrostatic part (Hartree and local pseudopotential part),
193 ! we need to get the Hartree potential and its gradient
194 safe_allocate(vh(1:gr%np_part))
195 safe_allocate(grad_vh(1:gr%np, 1:gr%der%dim))
196 if (ks%theory_level /= independent_particles) then
197 call lalg_copy(gr%np, hm%ks_pot%vhartree, vh)
198 else
199 if (hm%d%spin_channels > 1) then
200 safe_allocate(rho(1:gr%np_part))
201 call lalg_copy(gr%np, st%rho(:,1), rho)
202 call lalg_axpy(gr%np, m_one, st%rho(:,2), rho)
203 else
204 rho => st%rho(:,1)
205 end if
206 ! In the case of independent particles, we use the electron density without NLCC
207 call dpoisson_solve(hm%psolver, ions%namespace, vh, rho, all_nodes = .true.)
208 if (hm%d%spin_channels > 1) then
209 safe_deallocate_p(rho)
210 else
211 nullify(rho)
212 end if
213 end if
214 ehartree = hm%energy%hartree
215 ! We also compute the gradient here
216 call dderivatives_grad(gr%der, vh, grad_vh)
217
218 ! We now compute the various contributions to the stress tensor
219
220 ! Stress from kinetic energy of electrons
221 call stress_from_kinetic(gr, ions%space, hm, st, gr%symm, ions%latt%rcell_volume, stress_kin)
222 stress = stress + stress_kin
223
224 if (ks%theory_level == independent_particles) then
225 stress_hartree = m_zero
226 stress_xc = m_zero
227 else
228 call stress_from_hartree(gr, ions%space, ions%latt%rcell_volume, vh, grad_vh, ehartree, stress_hartree)
229 stress = stress + stress_hartree
230
231 call stress_from_xc(hm%energy, ions%latt%rcell_volume, ions%space%periodic_dim, stress_xc)
232
233 ! Nonlinear core correction contribution
234 if (allocated(st%rho_core)) then
235 call stress_from_xc_nlcc(ions%latt%rcell_volume, gr, st, ions, hm%ks_pot%vxc, stress_xc_nlcc)
236 stress_xc = stress_xc + stress_xc_nlcc
237 end if
238 ! Adds the beyond LDA contribution to the stress tensor
239 stress_xc = stress_xc + ks%stress_xc_gga / ions%latt%rcell_volume
240 stress = stress + stress_xc
241 end if
242
243 call stress_from_pseudo_local(gr, st, hm, ions, rho_total, vh, grad_vh, stress_ps_local)
244 stress_ps = stress_ps_local
245 stress = stress + stress_ps_local
246
247 safe_deallocate_a(vh)
248 safe_deallocate_a(grad_vh)
249
250 call stress_from_pseudo_nonloc(gr, st, hm, ions, stress_ps_nl)
251 stress_ps = stress_ps + stress_ps_nl
252 stress = stress + stress_ps_nl
253
254 call stress_from_hubbard(namespace, gr, st, hm, ions%space, ions%latt%rcell_volume, stress_hubbard)
255 stress = stress + stress_hubbard
256
257 call ion_interaction_stress(ions%ion_interaction, ions%space, ions%latt, ions%atom, ions%natoms, ions%pos, stress_ii)
258 stress = stress + stress_ii
259 ! Stress from kinetic energy of ion
260 ! Stress from ion-field interaction
261
262 ! Sign changed to fit conventional definition
263 stress = -stress
264
265 st%stress_tensors%kinetic = stress_kin
266 st%stress_tensors%Hartree = stress_hartree
267 st%stress_tensors%xc = stress_xc
268 st%stress_tensors%ps_local = stress_ps_local
269 st%stress_tensors%ps_nl = stress_ps_nl
270 st%stress_tensors%hubbard = stress_hubbard
271 st%stress_tensors%ion_ion = stress_ii
272
273 ! Stress contribution from vdW D3
274 if (ks%vdw%vdw_correction /= option__vdwcorrection__none) then
275 st%stress_tensors%vdw = hm%ep%vdw_stress
276 else
277 st%stress_tensors%vdw = m_zero
278 end if
279 stress = stress + st%stress_tensors%vdw
280
281 ! Symmetrize the stress tensor if we use k-point symmetries
282 if (hm%kpoints%use_symmetries) then
283 call dsymmetrize_tensor_cart(gr%symm, stress, use_non_symmorphic=.true.)
284 end if
285 ! We guarantee that the matrix is truely symmetric. There could be small numerical assymetries after symmetrization
286 call dsymmetrize_matrix(ions%space%periodic_dim, stress)
287
288 st%stress_tensors%total = stress
289
290 ! Some sumrule for validation
291 ! Sumrule is -3P_{kin}\Omega = 2 E_{kin}
292 st%stress_tensors%kinetic_sumrule = m_zero
293 ! Sumrule is -3P_{Hartree}\Omega = E_{Hartree}
294 st%stress_tensors%Hartree_sumrule = m_zero
295 if(ions%space%periodic_dim == 3) then
296 st%stress_tensors%kinetic_sumrule = (stress_kin(1,1) + stress_kin(2,2) + stress_kin(3,3))*ions%latt%rcell_volume
297 st%stress_tensors%kinetic_sumrule = st%stress_tensors%kinetic_sumrule - m_two * hm%energy%kinetic
298
299 st%stress_tensors%hartree_sumrule = (stress_hartree(1,1) + stress_hartree(2,2) + stress_hartree(3,3))*ions%latt%rcell_volume
300 st%stress_tensors%hartree_sumrule = st%stress_tensors%hartree_sumrule - hm%energy%hartree
301 end if
302
303 safe_deallocate_a(rho_total)
304
305 pop_sub(stress_calculate)
306 call profiling_out("STRESS_CALCULATE")
307 end subroutine stress_calculate
308
309 ! -------------------------------------------------------
324 subroutine stress_from_kinetic(gr, space, hm, st, symm, rcell_volume, stress_kin)
325 type(grid_t), intent(in) :: gr
326 class(space_t), intent(in) :: space
327 type(hamiltonian_elec_t), intent(in) :: hm
328 type(states_elec_t), intent(inout) :: st
329 type(symmetries_t), intent(in) :: symm
330 real(real64), intent(in) :: rcell_volume
331 real(real64), intent(out) :: stress_kin(3, 3)
332
333 integer :: ik, ist, idir, jdir, ib, minst, maxst
334 complex(real64), allocatable :: stress_l_block(:)
335 type(wfs_elec_t) :: psib, gpsib(space%dim)
336
337 call profiling_in("STRESS_FROM_KINETIC")
338 push_sub(stress_from_kinetic)
339
340 stress_kin(:,:) = m_zero
341
342 safe_allocate(stress_l_block(1:st%block_size))
343
344 do ik = st%d%kpt%start, st%d%kpt%end
345 if (st%kweights(ik) <= m_epsilon) cycle
346
347 do ib = st%group%block_start, st%group%block_end
348 minst = states_elec_block_min(st, ib)
349 maxst = states_elec_block_max(st, ib)
350
351 call hamiltonian_elec_copy_and_set_phase(hm, gr, st%d%kpt, st%group%psib(ib, ik), psib)
352
353 ! calculate the gradient
354 call zderivatives_batch_grad(gr%der, psib, gpsib, set_bc=.false.)
355
356 ! Accumulate the result
357 do idir = 1, space%periodic_dim
358 do jdir = idir, space%periodic_dim
359 call zmesh_batch_dotp_vector(gr, gpsib(idir), gpsib(jdir), stress_l_block)
360
361 do ist = minst, maxst
362 stress_kin(idir,jdir) = stress_kin(idir,jdir) &
363 + st%kweights(ik) * st%occ(ist, ik) &
364 * real(stress_l_block(ist - minst + 1), real64)
365 end do
366 end do
367 end do
368
369 do idir = 1, space%dim
370 call gpsib(idir)%end()
371 end do
372 call psib%end()
373
374 end do
375 end do
376
377 if (st%parallel_in_states .or. st%d%kpt%parallel) then
378 call comm_allreduce(st%st_kpt_mpi_grp, stress_kin)
379 end if
380
381
382 ! Symmetrize the kinetic stress tensor
383 call upper_triangular_to_hermitian(space%periodic_dim, stress_kin)
384
385 ! Symmetrize the stress tensor if we use k-point symmetries
386 if (hm%kpoints%use_symmetries) then
387 call dsymmetrize_tensor_cart(symm, stress_kin, use_non_symmorphic=.true.)
388 end if
389
390 stress_kin = stress_kin / rcell_volume
391
392 call profiling_out("STRESS_FROM_KINETIC")
393 pop_sub(stress_from_kinetic)
394 end subroutine stress_from_kinetic
395
396 ! -------------------------------------------------------
413 subroutine stress_from_hartree(gr, space, volume, vh, grad_vh, ehartree, stress_Hartree)
414 type(grid_t), intent(in) :: gr
415 class(space_t), intent(in) :: space
416 real(real64), intent(in) :: volume
417 real(real64), intent(in) :: vh(:)
418 real(real64), intent(in) :: grad_vh(:,:)
419 real(real64), intent(in) :: ehartree
420 real(real64), intent(out) :: stress_Hartree(3, 3)
421
422 integer :: idir, jdir
423
424 call profiling_in("STRESS_FROM_HARTREE")
425 push_sub(stress_from_hartree)
426
427 stress_hartree(:,:) = m_zero
428
429 do idir = 1, space%periodic_dim
430 do jdir = idir, space%periodic_dim
431 stress_hartree(idir, jdir) = -dmf_dotp(gr, grad_vh(:,idir), grad_vh(:, jdir))/m_four/m_pi
432 end do
433 stress_hartree(idir, idir) = stress_hartree(idir, idir) + ehartree
434 end do
435
436 call upper_triangular_to_hermitian(space%periodic_dim, stress_hartree)
437
438 stress_hartree = stress_hartree/volume
439
440 call profiling_out("STRESS_FROM_HARTREE")
441 pop_sub(stress_from_hartree)
442 end subroutine stress_from_hartree
443
444
445 ! -------------------------------------------------------
459 !
460 ! Note: We assume hm%energy%echange, correlation, and intnvxc
461 ! have already been calculated somewhere else.
462 subroutine stress_from_xc(energy, rcell_volume, periodic_dim, stress_xc)
463 type(energy_t), intent(in) :: energy
464 real(real64), intent(in) :: rcell_volume
465 integer, intent(in) :: periodic_dim
466 real(real64), intent(out) :: stress_xc(3, 3)
467
468 integer :: idir
469
470 call profiling_in("STRESS_FROM_XC")
471 push_sub(stress_from_xc)
472
473 stress_xc = m_zero
474 do idir = 1, periodic_dim
475 stress_xc(idir, idir) = - energy%exchange - energy%correlation + energy%intnvxc
476 end do
477 stress_xc(:,:) = stress_xc(:,:) / rcell_volume
478
479 call profiling_out("STRESS_FROM_XC")
480 pop_sub(stress_from_xc)
481 end subroutine stress_from_xc
482
483
484 ! -------------------------------------------------------
491 subroutine stress_from_xc_nlcc(rcell_volume, gr, st, ions, vxc, stress_xc_nlcc)
492 real(real64), intent(in) :: rcell_volume
493 type(grid_t), intent(in) :: gr
494 type(states_elec_t), intent(in) :: st
495 type(ions_t), intent(in) :: ions
496 real(real64), intent(in) :: vxc(:,:)
497 real(real64), intent(out) :: stress_xc_nlcc(3, 3)
498
499 integer :: idir, jdir, iat
500 real(real64), allocatable :: gnlcc(:,:), gnlcc_x(:,:,:), vxc_tot(:)
501
502 call profiling_in("STRESS_FROM_XC_NLCC")
503 push_sub(stress_from_xc_nlcc)
504
505 assert(allocated(st%rho_core))
507 stress_xc_nlcc = m_zero
508
509 ! We first accumulate the contribution from all the pseudo-ions
510 safe_allocate(gnlcc(gr%np, gr%der%dim))
511 safe_allocate(gnlcc_x(gr%np, gr%der%dim, gr%der%dim))
512 gnlcc_x = m_zero
513 do iat = ions%atoms_dist%start, ions%atoms_dist%end
514 assert(ions%atom(iat)%species%is_ps())
515 call species_get_nlcc_grad(ions%atom(iat)%species, ions%space, ions%latt, &
516 ions%pos(:,iat), gr, gnlcc, gnlcc_x)
517 end do
518 safe_deallocate_a(gnlcc)
519
520 if (ions%atoms_dist%parallel) then
521 call comm_allreduce(ions%atoms_dist%mpi_grp, gnlcc_x)
522 end if
523
524 ! Sum over spin of the xc potential
525 safe_allocate(vxc_tot(1:gr%np))
526 call lalg_copy(gr%np, vxc(:, 1), vxc_tot)
527 if(st%d%nspin > 1) call lalg_axpy(gr%np, m_one, vxc(:, 2), vxc_tot)
528
529 do idir = 1, ions%space%periodic_dim
530 do jdir = idir, ions%space%periodic_dim
531 stress_xc_nlcc(idir, jdir) = dmf_dotp(gr, vxc_tot, gnlcc_x(:,idir, jdir))
532 end do
533 end do
534 safe_deallocate_a(vxc_tot)
535 safe_deallocate_a(gnlcc_x)
536
537 call upper_triangular_to_hermitian(ions%space%periodic_dim, stress_xc_nlcc)
538
539 stress_xc_nlcc(:,:) = stress_xc_nlcc(:,:) / rcell_volume
540
541 call profiling_out("STRESS_FROM_XC_NLCC")
542 pop_sub(stress_from_xc_nlcc)
543 end subroutine stress_from_xc_nlcc
544
545 ! -------------------------------------------------------
564 subroutine stress_from_pseudo_nonloc(gr, st, hm, ions, stress_ps_nl)
565 type(grid_t), target, intent(in) :: gr
566 type(states_elec_t), intent(inout) :: st
567 type(hamiltonian_elec_t), intent(in) :: hm
568 type(ions_t), intent(in) :: ions
569 real(real64), intent(out) :: stress_ps_nl(3, 3)
570
571 integer :: ik, ist, idir, jdir
572 integer :: ib, minst, maxst
573 type(wfs_elec_t) :: psib, rvnl_psib(3), gpsib(3)
574 complex(real64), allocatable :: stress_tmp(:)
575
576 call profiling_in("STRESS_FROM_PSEUDO_NL")
578
579 assert(st%wfs_type == type_cmplx)
580
581 safe_allocate(stress_tmp(1:st%block_size))
582
583 stress_ps_nl = m_zero
585 do ik = st%d%kpt%start, st%d%kpt%end
586
587 if (st%kweights(ik) <= m_epsilon) cycle
588
589 do ib = st%group%block_start, st%group%block_end
590 minst = states_elec_block_min(st, ib)
591 maxst = states_elec_block_max(st, ib)
592
593 call hamiltonian_elec_copy_and_set_phase(hm, gr, st%d%kpt, st%group%psib(ib, ik), psib)
594
595 ! calculate the gradient
596 call zderivatives_batch_grad(gr%der, psib, gpsib, set_bc=.false.)
597
598
599 ! Get rV_NL |\psi> for all atoms
600 do idir = 1, gr%der%dim
601 call psib%copy_to(rvnl_psib(idir))
602 call batch_set_zero(rvnl_psib(idir))
603 end do
604 call hm%vnl%zr_vn_local(gr, st%d, gr%der%boundaries%spiral, psib, rvnl_psib)
605
606 do idir = 1, ions%space%periodic_dim
607 do jdir = idir, ions%space%periodic_dim
608 call zmesh_batch_dotp_vector(gr, gpsib(idir), rvnl_psib(jdir), stress_tmp)
609
610 do ist = minst, maxst
611 stress_ps_nl(idir, jdir) = stress_ps_nl(idir, jdir) &
612 + m_two * st%kweights(ik) * st%occ(ist, ik) * real(stress_tmp(ist-minst+1), real64)
613 end do
614
615 end do
616 end do
617
618 do idir = 1, gr%der%dim
619 call rvnl_psib(idir)%end()
620 call gpsib(idir)%end()
621 end do
622 call psib%end()
623 end do
624 end do
625
626 safe_deallocate_a(stress_tmp)
627
628 if (st%parallel_in_states .or. st%d%kpt%parallel) then
629 call comm_allreduce(st%st_kpt_mpi_grp, stress_ps_nl)
630 end if
631
632 ! Symmetrize the kinetic stress tensor
633 call upper_triangular_to_hermitian(ions%space%periodic_dim, stress_ps_nl)
634
635 ! Symmetrize the stress tensor if we use k-point symmetries
636 if (hm%kpoints%use_symmetries) then
637 call dsymmetrize_tensor_cart(gr%symm, stress_ps_nl, use_non_symmorphic=.true.)
638 end if
639
640 ! Add the nonlocal energy
641 do idir = 1, ions%space%periodic_dim
642 stress_ps_nl(idir, idir) = stress_ps_nl(idir, idir) + hm%energy%extern_non_local
643 end do
644
645 stress_ps_nl = stress_ps_nl/ions%latt%rcell_volume
646
647 call profiling_out("STRESS_FROM_PSEUDO_NL")
649
650 end subroutine stress_from_pseudo_nonloc
651
652
653 ! -------------------------------------------------------
670 subroutine stress_from_pseudo_local(gr, st, hm, ions, rho_total, vh, grad_vh, stress_ps_local)
671 type(grid_t), target, intent(in) :: gr
672 type(states_elec_t), intent(inout) :: st
673 type(hamiltonian_elec_t), intent(in) :: hm
674 type(ions_t), intent(in) :: ions
675 real(real64), contiguous, intent(inout) :: rho_total(:)
676 real(real64), intent(in) :: vh(:)
677 real(real64), intent(in) :: grad_vh(:,:)
678 real(real64), intent(out) :: stress_ps_local(3, 3)
679
680
681 real(real64) :: stress_SR(3, 3), stress_LR(3, 3)
682 real(real64) :: energy_ps_SR, charge, zi
683 real(real64), allocatable :: vloc(:), rvloc(:,:), rho_local_lr(:), rho_lr(:)
684 real(real64), allocatable :: grad_rho(:,:), rho_lr_x(:,:), vlr(:), grad_vlr(:,:)
685 integer :: idir, jdir, iatom
686 type(ps_t), pointer :: spec_ps
687
688 call profiling_in("STRESS_FROM_PSEUDO_LOC")
690
691 ! calculate stress from short-range local pseudopotentials
692 stress_sr = m_zero
693
694 safe_allocate(vloc(1:gr%np))
695 vloc = m_zero
696 safe_allocate(rvloc(1:gr%np, 1:gr%der%dim))
697 rvloc = m_zero
698 do iatom = 1, ions%natoms
699 call epot_local_pseudopotential_sr(gr, ions, iatom, vloc, rvloc)
700 end do
701 safe_deallocate_a(vloc)
702
703 safe_allocate(grad_rho(1:gr%np,1:gr%der%dim))
704 call dderivatives_grad(gr%der, rho_total, grad_rho)
705
706 energy_ps_sr = hm%energy%extern_local
707 do idir = 1, ions%space%periodic_dim
708 do jdir = idir, ions%space%periodic_dim
709 stress_sr(idir, jdir) = stress_sr(idir, jdir) &
710 +dmf_dotp(gr, rvloc(:, jdir), grad_rho(:, idir))
711 end do
712 stress_sr(idir,idir) = stress_sr(idir,idir) + energy_ps_sr
713 end do
714
715 call upper_triangular_to_hermitian(ions%space%periodic_dim, stress_sr)
716
717 stress_sr = stress_sr/ions%latt%rcell_volume
718
719 safe_deallocate_a(rvloc)
720 safe_deallocate_a(grad_rho)
721
722
723 ! calculate stress from long-range local pseudopotentials
724 stress_lr = m_zero
725
726 ! We treat the long-range part of the local potential as the Hartree term
727 ! We first sum the long range densities from atoms
728 safe_allocate(rho_lr(1:gr%np_part))
729 safe_allocate(rho_lr_x(1:gr%np, 1:gr%der%dim))
730 rho_lr = m_zero
731 rho_lr_x = m_zero
732 safe_allocate(rho_local_lr(1:gr%np))
733 do iatom = ions%atoms_dist%start, ions%atoms_dist%end
734 assert(ions%atom(iatom)%species%is_ps())
735 call species_get_long_range_density(ions%atom(iatom)%species, ions%namespace, ions%space, ions%latt, &
736 ions%pos(:, iatom), gr, rho_local_lr, nlr_x=rho_lr_x)
737
738 call lalg_axpy(gr%np, m_one, rho_local_lr, rho_lr)
739 end do
740 safe_deallocate_a(rho_local_lr)
741
742 if (ions%atoms_dist%parallel) then
743 call comm_allreduce(ions%atoms_dist%mpi_grp, rho_lr)
744 call comm_allreduce(ions%atoms_dist%mpi_grp, rho_lr_x)
745 end if
746
747 do idir = 1, ions%space%periodic_dim
748 do jdir = idir, ions%space%periodic_dim
749 stress_lr(idir, jdir) = stress_lr(idir, jdir) + dmf_dotp(gr, rho_lr_x(:,jdir), grad_vh(:, idir))
750 end do
751 end do
752 safe_deallocate_a(rho_lr_x)
753
754 safe_allocate(vlr(1:gr%np_part))
755 call dpoisson_solve(hm%psolver, ions%namespace, vlr, rho_lr, all_nodes = .true.)
756 safe_deallocate_a(rho_lr)
757
758 safe_allocate(grad_vlr(1:gr%np, 1:gr%der%dim))
759 call dderivatives_grad(gr%der, vlr, grad_vlr)
760 safe_deallocate_a(vlr)
761
762 do idir = 1, ions%space%periodic_dim
763 do jdir = idir, ions%space%periodic_dim
764 stress_lr(idir, jdir) = stress_lr(idir, jdir) - dmf_dotp(gr, grad_vh(:,idir), grad_vlr(:, jdir))/m_two/m_pi
765 end do
766 end do
767
768 call upper_triangular_to_hermitian(ions%space%periodic_dim, stress_lr)
769
770 safe_deallocate_a(grad_vlr)
771
772 ! Contribution from G=0 component of the long-range part
773 !
774 if (ions%space%periodic_dim == 3) then
775 charge = m_zero
776 do iatom = 1, ions%natoms
777 charge = charge + ions%atom(iatom)%species%get_zval()
778 end do
779
780 do iatom = 1, ions%natoms
781 select type(spec => ions%atom(iatom)%species)
782 type is(pseudopotential_t)
783 zi = spec%get_zval()
784 spec_ps => spec%ps
785
786 do idir = 1, ions%space%periodic_dim
787 stress_lr(idir, idir) = stress_lr(idir, idir) &
788 + m_two*m_pi*spec_ps%sigma_erf**2*charge*zi /ions%latt%rcell_volume
789 end do
790 end select
791 end do
792 end if
793
794 stress_lr = stress_lr/ions%latt%rcell_volume
795
796 stress_ps_local = stress_sr + stress_lr
797
798 call profiling_out("STRESS_FROM_PSEUDO_LOC")
800
801 end subroutine stress_from_pseudo_local
802
803 ! -------------------------------------------------------
804 subroutine epot_local_pseudopotential_sr(mesh, ions, iatom, vpsl, rvpsl)
805 class(mesh_t), intent(in) :: mesh
806 type(ions_t), intent(in) :: ions
807 integer, intent(in) :: iatom
808 real(real64), intent(inout) :: vpsl(:)
809 real(real64), intent(inout) :: rvpsl(:,:)
810
811 integer :: ip
812 real(real64) :: radius, vl_ip
813 type(submesh_t) :: sphere
814 type(ps_t), pointer :: ps
815
817
818 if (.not. ions%atom(iatom)%species%is_ps()) then
820 return
821 endif
822
823 call profiling_in("EPOT_LOCAL_PS_SR")
824
825 select type(spec=>ions%atom(iatom)%species)
826 type is(pseudopotential_t)
827
828 ps => spec%ps
829
830 radius = ps%vl%x_threshold*1.05_real64
831
832 call submesh_init(sphere, ions%space, mesh, ions%latt, ions%pos(:, iatom), radius)
833
834 ! Cannot be written (correctly) as a vector expression since for periodic systems,
835 ! there can be values ip, jp such that sphere%map(ip) == sphere%map(jp).
836 do ip = 1, sphere%np
837 vl_ip = spline_eval(ps%vl, sphere%r(ip))
838 vpsl(sphere%map(ip)) = vpsl(sphere%map(ip)) + vl_ip
839 rvpsl(sphere%map(ip), 1:ions%space%periodic_dim) = rvpsl(sphere%map(ip), 1:ions%space%periodic_dim) &
840 + sphere%rel_x(1:ions%space%periodic_dim, ip) * vl_ip
841 end do
842
843 call submesh_end(sphere)
844
845 nullify(ps)
846
847 end select
848
849 call profiling_out("EPOT_LOCAL_PS_SR")
851 end subroutine epot_local_pseudopotential_sr
852
853
854 ! -------------------------------------------------------
868 subroutine stress_from_hubbard(namespace, gr, st, hm, space, rcell_volume, stress_hubbard)
869 type(namespace_t), intent(in) :: namespace
870 type(grid_t), target, intent(in) :: gr
871 type(states_elec_t), intent(inout) :: st
872 type(hamiltonian_elec_t), intent(in) :: hm
873 type(space_t), intent(in) :: space
874 real(real64), intent(in) :: rcell_volume
875 real(real64), intent(out) :: stress_hubbard(3, 3)
876
877 integer :: ik, ist, idir, jdir
878 integer :: ib, minst, maxst
879 type(wfs_elec_t) :: psib, rvu_psib(3), gpsib(3)
880 complex(real64), allocatable :: stress_tmp(:)
881
882 if (hm%lda_u%level == dft_u_none) then
883 stress_hubbard = m_zero
884 return
885 end if
886
887 push_sub_with_profile(stress_from_hubbard)
888
889 assert(st%wfs_type == type_cmplx)
890
891 safe_allocate(stress_tmp(1:st%block_size))
892
893 stress_hubbard = m_zero
894
895 do ik = st%d%kpt%start, st%d%kpt%end
896
897 if (st%kweights(ik) <= m_epsilon) cycle
898
899 do ib = st%group%block_start, st%group%block_end
900 minst = states_elec_block_min(st, ib)
901 maxst = states_elec_block_max(st, ib)
902
903 call hamiltonian_elec_copy_and_set_phase(hm, gr, st%d%kpt, st%group%psib(ib, ik), psib)
904
905 ! calculate the gradient
906 call zderivatives_batch_grad(gr%der, psib, gpsib, set_bc=.false.)
907
908 ! Get rV_U |\psi> for all atoms
909 do idir = 1, gr%der%dim
910 call psib%copy_to(rvu_psib(idir))
911 call batch_set_zero(rvu_psib(idir))
912 end do
913
914 call zlda_u_rvu(hm%lda_u, gr, space, hm%d, namespace, psib, rvu_psib)
915
916 do idir = 1,3
917 do jdir = idir,3
918 call zmesh_batch_dotp_vector(gr, gpsib(idir), rvu_psib(jdir), stress_tmp)
919
920 do ist = minst, maxst
921 stress_hubbard(idir, jdir) = stress_hubbard(idir, jdir) &
922 + m_two * st%kweights(ik) * st%occ(ist, ik) * real(stress_tmp(ist-minst+1), real64)
923 end do
924
925 end do
926 end do
927
928 do idir = 1, gr%der%dim
929 call rvu_psib(idir)%end()
930 call gpsib(idir)%end()
931 end do
932 call psib%end()
933 end do
934 end do
935
936 safe_deallocate_a(stress_tmp)
937
938 if (st%parallel_in_states .or. st%d%kpt%parallel) then
939 call comm_allreduce(st%st_kpt_mpi_grp, stress_hubbard)
940 end if
941
942 ! Symmetrize the kinetic stress tensor
943 call upper_triangular_to_hermitian(gr%der%dim, stress_hubbard)
944
945 ! Symmetrize the stress tensor if we use k-point symmetries
946 if (hm%kpoints%use_symmetries) then
947 call dsymmetrize_tensor_cart(gr%symm, stress_hubbard)
948 end if
949
950 ! Add the Hubbard energy
951 do idir = 1,3
952 stress_hubbard(idir, idir) = stress_hubbard(idir, idir) + hm%energy%int_dft_u
953 end do
954
955 stress_hubbard = stress_hubbard/rcell_volume
956
957 pop_sub_with_profile(stress_from_hubbard)
958 end subroutine stress_from_hubbard
959
960
961 ! -------------------------------------------------------
962 subroutine output_stress(iunit, space_dim, stress_tensors, all_terms)
963 integer, intent(in) :: iunit
964 integer, intent(in) :: space_dim
965 type(stress_t), intent(in) :: stress_tensors
966 logical, optional, intent(in) :: all_terms
967
968 logical :: write_all_terms
969 character(len=16) :: stress_unit
970
971 write_all_terms = optional_default(all_terms, .true.)
972
973 write(stress_unit, '(4a,i1)') trim(units_abbrev(units_out%energy)), '/', &
974 trim(units_abbrev(units_out%length)), '^', space_dim
975
976 if (mpi_grp_is_root(mpi_world)) then
977
978 if (write_all_terms) then
979 write(iunit, '(3a)') 'Kinetic stress tensor [', trim(stress_unit), '] ='
980 call print_stress_tensor(iunit, space_dim, stress_tensors%kinetic)
981 if (space_dim == 3) then
982 write(iunit, '(a, es15.6, 3a)') 'Kinetic pressure sumrule violation: ', &
983 units_from_atomic(units_out%energy, stress_tensors%kinetic_sumrule), &
984 ' [', trim(units_abbrev(units_out%energy)), ']'
985 write(iunit,*)
986 end if
987
988
989 write(iunit, '(3a)') 'Hartree stress tensor [', trim(stress_unit), '] ='
990 call print_stress_tensor(iunit, space_dim, stress_tensors%Hartree)
991 if (space_dim == 3) then
992 write(iunit, '(a, es15.6, 3a)') 'Hartree pressure sumrule violation: ', &
993 units_from_atomic(units_out%energy, stress_tensors%hartree_sumrule), &
994 ' [', trim(units_abbrev(units_out%energy)), ']'
995 write(iunit,*)
996 end if
997
998 write(iunit, '(3a)') 'XC stress tensor [', trim(stress_unit), '] ='
999 call print_stress_tensor(iunit, space_dim, stress_tensors%xc)
1000
1001 write(iunit, '(3a)') 'Local pseudo. stress tensor [', trim(stress_unit), '] ='
1002 call print_stress_tensor(iunit, space_dim, stress_tensors%ps_local)
1003
1004 write(iunit, '(3a)') 'Nonlocal pseudo. stress tensor [', trim(stress_unit), '] ='
1005 call print_stress_tensor(iunit, space_dim, stress_tensors%ps_nl)
1006
1007 write(iunit, '(3a)') 'Ion-ion stress tensor [', trim(stress_unit), '] ='
1008 call print_stress_tensor(iunit, space_dim, stress_tensors%ion_ion)
1009
1010 write(iunit, '(3a)') 'vdW stress tensor [', trim(stress_unit), '] ='
1011 call print_stress_tensor(iunit, space_dim, stress_tensors%vdw)
1012
1013 write(iunit, '(3a)') 'Hubbard stress tensor [', trim(stress_unit), '] ='
1014 call print_stress_tensor(iunit, space_dim, stress_tensors%hubbard)
1015 end if
1016
1017 write(iunit, '(3a)') 'Total stress tensor [', trim(stress_unit), '] ='
1018 call print_stress_tensor(iunit, space_dim, stress_tensors%total)
1019
1020 end if
1021 end subroutine output_stress
1022
1023
1024 subroutine output_pressure(iunit, space_dim, total_stress_tensor)
1025 integer, intent(in) :: iunit
1026 integer, intent(in) :: space_dim
1027 real(real64), intent(in) :: total_stress_tensor(3,3)
1028
1029 integer :: idim
1030 real(real64) :: pressure
1031 character(len=16) :: stress_unit
1032
1033 write(stress_unit, '(4a,i1)') trim(units_abbrev(units_out%energy)), '/', &
1034 trim(units_abbrev(units_out%length)), '^', space_dim
1035
1036 pressure = m_zero
1037 do idim = 1, space_dim
1038 pressure = pressure - total_stress_tensor(idim, idim) / real(space_dim, real64)
1039 end do
1040
1041 write(iunit,'(3a,es16.8)', advance="no") 'Pressure [', trim(stress_unit), '] = ', &
1042 units_from_atomic(units_out%energy/units_out%length**space_dim, pressure)
1043 if (space_dim == 3) then
1044 write(iunit,'(2x,a,f16.8)') 'Pressure [GPa] = ', units_from_atomic(unit_gpa, pressure)
1045 else
1046 write(iunit,*)
1047 end if
1048
1049 end subroutine output_pressure
1050
1051 subroutine print_stress_tensor(ounit, space_dim, tensor)
1052 integer, intent(in) :: ounit
1053 integer, intent(in) :: space_dim
1054 real(real64), intent(in) :: tensor(3,3)
1056 real(real64) :: tensor_with_unit(3,3)
1057 integer :: idim, jdim
1058
1059 tensor_with_unit = units_from_atomic(units_out%energy/units_out%length**space_dim, tensor)
1060
1061 write(ounit,'(a9,2x)', advance="no")"T_{ij}"
1062 do jdim = 1, space_dim
1063 write(ounit,'(i18)', advance="no") jdim
1064 end do
1065 write(ounit,*)
1066 do idim = 1, space_dim
1067 write(ounit,'(i9,2x)', advance="no") idim
1068 do jdim = 1, space_dim
1069 write(ounit,'(es18.9)', advance="no") tensor_with_unit(idim, jdim)
1070 end do
1071 write(ounit,*)
1072 end do
1073 write(ounit,*)
1074
1075 end subroutine print_stress_tensor
1076
1077
1078end module stress_oct_m
1079
1080!! Local Variables:
1081!! mode: f90
1082!! coding: utf-8
1083!! End:
constant times a vector plus a vector
Definition: lalg_basic.F90:171
Copies a vector x, to a vector y.
Definition: lalg_basic.F90:186
This module implements common operations on batches of mesh functions.
Definition: batch_ops.F90:116
subroutine, public batch_set_zero(this, np, async)
fill all mesh functions of the batch with zero
Definition: batch_ops.F90:242
Module implementing boundary conditions in Octopus.
Definition: boundaries.F90:122
This module implements a calculator for the density and defines related functions.
Definition: density.F90:120
This module calculates the derivatives (gradients, Laplacians, etc.) of a function.
subroutine, public dderivatives_grad(der, ff, op_ff, ghost_update, set_bc, to_cartesian)
apply the gradient to a mesh function
subroutine, public zderivatives_batch_grad(der, ffb, opffb, ghost_update, set_bc, to_cartesian, metric, factor)
apply the gradient to a batch of mesh functions
integer, parameter, public spinors
subroutine, public energy_calc_total(namespace, space, hm, gr, st, ext_partners, iunit, full)
This subroutine calculates the total energy of the system. Basically, it adds up the KS eigenvalues,...
integer, parameter, public scalar_relativistic_zora
Definition: epot.F90:166
integer, parameter, public fully_relativistic_zora
Definition: epot.F90:166
real(real64), parameter, public m_two
Definition: global.F90:190
real(real64), parameter, public m_zero
Definition: global.F90:188
real(real64), parameter, public m_four
Definition: global.F90:192
real(real64), parameter, public m_pi
some mathematical constants
Definition: global.F90:186
real(real64), parameter, public m_epsilon
Definition: global.F90:204
real(real64), parameter, public m_one
Definition: global.F90:189
This module implements the underlying real-space grid.
Definition: grid.F90:117
subroutine, public hamiltonian_elec_copy_and_set_phase(hm, gr, kpt, psib, psib_with_phase)
Copy a batch to another batch and apply the Bloch phase to it.
This module defines classes and functions for interaction partners.
Definition: io.F90:114
subroutine, public ion_interaction_stress(this, space, latt, atom, natoms, pos, stress_ii)
Computes the contribution to the stress tensor the ion-ion energy.
A module to handle KS potential, without the external potential.
integer, parameter, public independent_particles
integer, parameter, public generalized_kohn_sham_dft
integer, parameter, public kohn_sham_dft
integer, parameter, public dft_u_none
Definition: lda_u.F90:201
subroutine, public zlda_u_rvu(this, mesh, space, d, namespace, psib, gpsib)
This routine computes .
Definition: lda_u.F90:5313
This modules implements the routines for doing constrain DFT for noncollinear magnetism.
integer, parameter, public constrain_none
This module is intended to contain "only mathematical" functions and procedures.
Definition: math.F90:115
subroutine, public dsymmetrize_matrix(nn, aa)
Definition: math.F90:1449
This module defines functions over batches of mesh functions.
Definition: mesh_batch.F90:116
subroutine, public zmesh_batch_dotp_vector(mesh, aa, bb, dot, reduce, cproduct)
calculate the vector of dot-products of mesh functions between two batches
This module defines various routines, operating on mesh functions.
This module defines the meshes, which are used in Octopus.
Definition: mesh.F90:118
subroutine, public messages_not_implemented(feature, namespace)
Definition: messages.F90:1113
character(len=256), dimension(max_lines), public message
to be output by fatal, warning
Definition: messages.F90:160
subroutine, public messages_fatal(no_lines, only_root_writes, namespace)
Definition: messages.F90:414
logical function mpi_grp_is_root(grp)
Is the current MPI process of grpcomm, root.
Definition: mpi.F90:430
type(mpi_grp_t), public mpi_world
Definition: mpi.F90:266
subroutine, public dpoisson_solve(this, namespace, pot, rho, all_nodes, kernel, reset)
Calculates the Poisson equation. Given the density returns the corresponding potential.
Definition: poisson.F90:892
subroutine, public profiling_out(label)
Increment out counter and sum up difference between entry and exit time.
Definition: profiling.F90:623
subroutine, public profiling_in(label, exclude)
Increment in counter and save entry time.
Definition: profiling.F90:552
Definition: ps.F90:114
subroutine, public species_get_long_range_density(species, namespace, space, latt, pos, mesh, rho, sphere_inout, nlr_x)
subroutine, public species_get_nlcc_grad(species, space, latt, pos, mesh, rho_core_grad, gnlcc_x)
real(real64) function, public spline_eval(spl, x)
Definition: splines.F90:441
This module handles spin dimensions of the states and the k-point distribution.
integer pure function, public states_elec_block_max(st, ib)
return index of last state in block ib
integer pure function, public states_elec_block_min(st, ib)
return index of first state in block ib
This module implements the calculation of the stress tensor.
Definition: stress.F90:118
subroutine stress_from_kinetic(gr, space, hm, st, symm, rcell_volume, stress_kin)
Computes the contribution to the stress tensor from the kinetic energy.
Definition: stress.F90:418
subroutine stress_from_xc(energy, rcell_volume, periodic_dim, stress_xc)
Computes the contribution to the stress tensor from the xc energy.
Definition: stress.F90:556
subroutine print_stress_tensor(ounit, space_dim, tensor)
Definition: stress.F90:1145
subroutine, public output_pressure(iunit, space_dim, total_stress_tensor)
Definition: stress.F90:1118
subroutine epot_local_pseudopotential_sr(mesh, ions, iatom, vpsl, rvpsl)
Definition: stress.F90:898
subroutine, public stress_calculate(namespace, gr, hm, st, ions, ks, ext_partners)
This computes the total stress on the lattice.
Definition: stress.F90:186
subroutine stress_from_hubbard(namespace, gr, st, hm, space, rcell_volume, stress_hubbard)
Computes the contribution to the stress tensor from the Hubbard energy.
Definition: stress.F90:962
subroutine stress_from_xc_nlcc(rcell_volume, gr, st, ions, vxc, stress_xc_nlcc)
Computes the NLCC contribution to the stress tensor from the xc energy.
Definition: stress.F90:585
subroutine stress_from_pseudo_nonloc(gr, st, hm, ions, stress_ps_nl)
Computes the contribution to the stress tensor from the nonlocal part of the pseudopotentials.
Definition: stress.F90:658
subroutine stress_from_hartree(gr, space, volume, vh, grad_vh, ehartree, stress_Hartree)
Computes the contribution to the stress tensor from the Hartree energy.
Definition: stress.F90:507
subroutine, public output_stress(iunit, space_dim, stress_tensors, all_terms)
Definition: stress.F90:1056
subroutine stress_from_pseudo_local(gr, st, hm, ions, rho_total, vh, grad_vh, stress_ps_local)
Computes the contribution from the local part of the pseudopotential.
Definition: stress.F90:764
subroutine, public submesh_end(this)
Definition: submesh.F90:736
subroutine, public submesh_init(this, space, mesh, latt, center, rc)
Definition: submesh.F90:280
subroutine, public dsymmetrize_tensor_cart(symm, tensor, use_non_symmorphic)
Symmetric a rank-2 tensor defined in Cartesian space.
type(type_t), public type_cmplx
Definition: types.F90:134
brief This module defines the class unit_t which is used by the unit_systems_oct_m module.
Definition: unit.F90:132
character(len=20) pure function, public units_abbrev(this)
Definition: unit.F90:223
This module defines the unit system, used for input and output.
type(unit_system_t), public units_out
type(unit_t), public unit_gpa
For output pressure in GPa.
Definition: xc.F90:114
logical pure function, public xc_is_energy_functional(xcs)
Is one of the x or c functional is not an energy functional.
Definition: xc.F90:731
pure logical function, public in_family(family, xc_families)
Definition: xc.F90:623
A module that takes care of xc contribution from vdW interactions.
Definition: xc_vdw.F90:116
integer(int64), dimension(5), parameter, public d3_lib_options
VDWCORRECTION options that correspond to the DFT-D3 library.
Definition: xc_vdw.F90:169
Description of the grid, containing information on derivatives, stencil, and symmetries.
Definition: grid.F90:168
Describes mesh distribution to nodes.
Definition: mesh.F90:186
A type storing the information and data about a pseudopotential.
Definition: ps.F90:184
The states_elec_t class contains all electronic wave functions.
A submesh is a type of mesh, used for the projectors in the pseudopotentials It contains points on a ...
Definition: submesh.F90:175
batches of electronic states
Definition: wfs_elec.F90:138
int true(void)